Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271968g00008 ATGGATTTGGATGATTTCCGATCCATATTGGATACAGCCGGCGTCGACGTTTGGCTCTTCATCGACACCGCCATCACCGTCGCCTCCTTGGATTGCGGCGACGAGCTGAGGCGACGGAGAGATGGAATCATAGAACGAATCTTCGCTGCCACCACGCCTCCTCCGCCCTGCCAGAACTGCGACGGCGATCGTAACCTGAGGTCCAATGGCCACCAAATCAAGAAACGCCTCAGCCCTAGCCCTAGCCCTCAGCGACAACACAGCCACCACCAGCAACGTCGTGGTGGTCGCGGTGCCGCCGCTGCTGTTTCTCCCTCGACGCCGCAGTCTCTCGGAGATGACGATGACAACGGCCACAACGACGCCCCCGAAGACGAACGTGAAGAGTTGGATCCTTACGGCGGCTTGTTCGATGACGAGCAGAAGAAGATTCTAGAGATTAAAGAGCAGCTCGAAGAACCTGACCAGCCTGAAGAATCGTTGGTGGAGCTGCTTCAAAATCTCGCGGACATGGATATTACATTCCAAGCGCTTAAGGAGACTGACATTGGGAGGCACGTGAATCGGTTGAGGAAGCATCCATCCAATGACGTTCGCCGATTGGTGAAGCTACTTGTCAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTTAGGTTGAATCAACCGGGTGCAACAGCTTCTCTCATGGCTGATGGGGACTCTCCACCGCTGAAAAACACCCAAAACGGGCATCATCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGAAGTTCTGGGTCTGACCGAAACACCTCAGAGGCAGAACCAAAACCAAAAGTGATTCCCCGCAAAGAAGCTCCGCCAAAACCAACGCCGCCACCTTCAGTCCCTACCCCTTCCATCGCCTTCCAAAACAGACAGAGAGAGCAAAGAGATTTTGATGCGGAGAGGCTTGCTTCGGCCAGGAAGCGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGGTGGAATTCTCGTTTCCATAGTTTCTCAAAAGATTTCTTACTATAGTTAG 1041 0.5264 MDLDDFRSILDTAGVDVWLFIDTAITVASLDCGDELRRRRDGIIERIFAATTPPPPCQNCDGDRNLRSNGHQIKKRLSPSPSPQRQHSHHQQRRGGRGAAAAVSPSTPQSLGDDDDNGHNDAPEDEREELDPYGGLFDDEQKKILEIKEQLEEPDQPEESLVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVRLNQPGATASLMADGDSPPLKNTQNGHHQIPDFAYSPNPHNGSSGSDRNTSEAEPKPKVIPRKEAPPKPTPPPSVPTPSIAFQNRQREQRDFDAERLASARKRLQENYKEAENGGILVSIVSQKISYYS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271968g00008 346 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 138 225 IPR035441 -
Stsc271968g00008 346 MobiDBLite consensus disorder prediction 49 68 - -
Stsc271968g00008 346 Coils Coil 311 331 - -
Stsc271968g00008 346 MobiDBLite consensus disorder prediction 281 295 - -
Stsc271968g00008 346 CDD TFIIS_I 141 214 - -
Stsc271968g00008 346 MobiDBLite consensus disorder prediction 227 309 - -
Stsc271968g00008 346 Pfam TFIIS helical bundle-like domain 164 213 IPR017923 -
Stsc271968g00008 346 ProSiteProfiles TFIIS N-terminal domain profile. 139 216 IPR017923 -
Stsc271968g00008 346 MobiDBLite consensus disorder prediction 73 135 - -
Stsc271968g00008 346 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 142 222 IPR035441 -
Stsc271968g00008 346 SMART TFS2_5 144 215 IPR003617 GO:0005634
Stsc271968g00008 346 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 331 IPR044790 -
Stsc271968g00008 346 MobiDBLite consensus disorder prediction 234 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271968g00008 Stsc-Chr271968 57403 60309 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Stsc271968g00008 Med26 1.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271968g00008 - - aip:107622503 561.222