Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271965g00020 ATGGAAATTGATCTGAACCATGCAGTGACTGAGGTTGAAAAGAATGCAACTTGCAATGGGGGCTGTCACAAAGAACAAGCTACTGCTTCTTGTGTGTGCTGTGTGCCATCATCATCATCATCCTCTGCTGTGTCTTCTTCTTCATCCTATCTGGAGCTATGGCATGCCTGTGCTGGCCCTCTTACTTCTCTCCCAAAGAAAGGGAATGTGGTTGTCTACTTCCCACAAGGCCACTTAGAGCAAGCTGCATCTTTCTCTCCCTTCACACCATTGGAGATTCCAACACATGATCTTCAACCACAGATCTTCTGTAGAGTTGTCAATGTCCAACTACTTGCCAATAAGGAGAATGATGAGGTTTACACACAGGTCACTTTGCTTCCCCAAGCTGAGTTGGCAGGGATGGGGAAAGAGCTTCTTGAAGAGTTGGGAGCTGATGAGGAAGGAAATGGAAGAACACCTACAAAGACAACACCTCACATGTTCTGCAAGACACTCACAGCCTCTGATACAAGCACTCATGGCGGTTTCTCCGTTCCTCGTAGAGCTGCTGAAGATTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGACCATCTCAAGAGCTTATTGCAACAGACCTGCATGGTGTGGAGTGGAAATTTCGCCATATTTACAGAGGTCAGCCAAGGCGGCATCTACTCACTACCGGATGGAGTATTTTTGTTAGCCAAAAGAATCTTGTGTCTGGTGATGCTGTGCTTTTCCTAAGGGGTGAAAATGGAGAACTGAGATTGGGAATCCGAAGAGCTGTTCGACCAAGAAATGGTCTTCCTGAGTCTATTGTTGGTAACCAGAGTTGTTACCCCAATTTCCTTTCTTCTGTGGCTAATGCTATATCTGCAAAAAGCATGTTTCATGTTTTCTACAGTCCAAGGTAA 918 0.4542 MEIDLNHAVTEVEKNATCNGGCHKEQATASCVCCVPSSSSSSAVSSSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQAASFSPFTPLEIPTHDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELAGMGKELLEELGADEEGNGRTPTKTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELIATDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNGLPESIVGNQSCYPNFLSSVANAISAKSMFHVFYSPR 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271965g00020 305 SMART B3_2 162 264 IPR003340 GO:0003677
Stsc271965g00020 305 Pfam B3 DNA binding domain 162 263 IPR003340 GO:0003677
Stsc271965g00020 305 FunFam Auxin response factor 160 264 - -
Stsc271965g00020 305 Gene3D - 160 264 IPR015300 -
Stsc271965g00020 305 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 48 305 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc271965g00020 305 SUPERFAMILY DNA-binding pseudobarrel domain 154 274 IPR015300 -
Stsc271965g00020 305 CDD B3_DNA 160 262 IPR003340 GO:0003677
Stsc271965g00020 305 ProSiteProfiles B3 DNA-binding domain profile. 162 264 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271965g00020 Stsc-Chr271965 111364 113653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271965g00020 45 305 B3 DNA Binding Superfamily AT5G60450 81.061 7.03e-147 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc271965g00020 B3 8.8e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271965g00020 - - ahf:112706773 575.859