Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc271965g00018 | ATGTCAGTGGTAGACATTCTTTTCCGGGTGGATTCCATATGCAGCAAATACGACAAATACGACCTAGACAAGCAGCGGGAACAGAATGCGTACGGTGATGACGCCTTCGCTCGCCTCTACGCCACCGTTGATTCCACCATCCTAGCCGCCCTCAAGAAATCTGATGCTGCTCTGGCGGAGAACAACAGAGCAGCTGCTGCTGCTCTCAATGCGGAGGTTCGACGTGCCAAGGGTAGACTCATGGACGAGCTTCCTAAGCTCCGCAAATTGGCAAAGAAGAAGGTGAAAGGTTTGACAGAAGAAGATCTGGCCATCCGTGAGGATCTTGTATTGGCATTGCCAGAACGAATCCAAGCAATACCTGATGGTATTACCACTGTCAATCAACCCGGCGGAGGAGGATGGACATCTCAGCCTAACATCAAGTTTGAGTCTGACGTGCATCGCGGCTCTGATTATTTCGAGCAATCTGAAGAATCCAGTCAGTTTAGAAATGAATATGAAATGCGCAGGATGAAACAGGATGAAGGTCTTGATTTCATATCGGAGGGATTGGATACTTTGAAAAATCTGGCTCATGACATGAATGAGGAAATGGATAGGCAAGTTCCTCTAATGGACGAAATTGACGCAAAGGTCGATAGGGCAACAGCTGATGTGAGAAACACTAACAAAAGATTGAAACAAAGACTCACTGAGGTAATTGATGAACTTGATTAA | 720 | 0.4653 | MSVVDILFRVDSICSKYDKYDLDKQREQNAYGDDAFARLYATVDSTILAALKKSDAALAENNRAAAAALNAEVRRAKGRLMDELPKLRKLAKKKVKGLTEEDLAIREDLVLALPERIQAIPDGITTVNQPGGGGWTSQPNIKFESDVHRGSDYFEQSEESSQFRNEYEMRRMKQDEGLDFISEGLDTLKNLAHDMNEEMDRQVPLMDEIDAKVDRATADVRNTNKRLKQRLTEVIDELD | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc271965g00018 | 239 | SUPERFAMILY | SNARE fusion complex | 162 | 228 | - | - | |
| Stsc271965g00018 | 239 | Gene3D | - | 168 | 229 | - | - | |
| Stsc271965g00018 | 239 | Coils | Coil | 206 | 239 | - | - | |
| Stsc271965g00018 | 239 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 168 | 230 | IPR000727 | - | |
| Stsc271965g00018 | 239 | CDD | SNARE_Qc | 173 | 229 | - | - | |
| Stsc271965g00018 | 239 | PANTHER | SYNAPTOSOMAL ASSOCIATED PROTEIN | 136 | 231 | - | - | |
| Stsc271965g00018 | 239 | FunFam | Putative syntaxin-71-like | 168 | 229 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc271965g00018 | Stsc-Chr271965 | 93131 | 94140 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc271965g00018 | 1 | 234 | SNARE and Associated Proteins | AT3G09740 | 62.762 | 4.55e-104 | 300 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc271965g00018 | K08506 | - | gmx:100817729 | 319.316 |