Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271965g00016 ATGATGATGTTGTCTTCGTCAGAAGCCTTTTCATCAGCACCTCCTACTTCCCCCAGCAGCAGCTTGCTTCATCAAGTTCATGACCCAAACCCTAATAATAATCCCAACCCTAATTCAAAGCCAGTGAAGAGAAAGCGAACTCAACCCGGAAGACCAGATCCAGAGGCAGAAGTAATAGCTCTATCGCCAAAGTCACTGATGGCAACGAACCGTTTCGTATGCGAAATATGCAAGAAAGGGTTCCAGAGGGACCAGAACCTACAGCTGCACCGGCGAGGCCACAACCTCCCCTGGAAGCTGAAGCAGAGGGACAAGGACGAGCTTCTTCGGAAGAAGGTGTACGTGTGCCCGGAGAAGACCTGCGTTCACCACCACGCTTCTCGTGCTCTGGGGGACTTTACGGGGATCAAGAAGCACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAGAAATGCTCCAAGAAGTACGCCGTTCAGTCGGATTGGAAGGCCCATTCCAAGATCTGTGGCACCAGAGAGTATCGCTGTCACTGCGGCACTCTCTTCTCCAGGAAGGACAGTTTCCTTACTCATCGAGCCTTTTGTCAAGCCTTGCCCACACCAAACAACTACAATGGCCTAATTGGTGGTAGTGTCTCCATGGCAGTAGCAGAAGCACCGTCATCATCGCTATGGTTTGACCAAACAATGAATGTGTTGGGATCACCATCGCCATGGATGAATAATAATAATAATGTATTGGTACTCAAGAGAGAGGAAGAAGAGAAGTTGTACTCAGCATCATCATGGTCATCAACTTTTGTAGGTCACATGTCTGCTACTGCCTTGTTGCAGAAAGCTACTCAAATGGAATCTATTACCAGCATGGTCTCTAATAACAACAACAATGCGTTGGGATTCATGCTTAGTAGTTCTTCTTCCCAACCCAATAGTATTGGATGCGGTGCAGCCTTCTCCTCCTTCAATAGTAATTCATCAAACTTACTTTTACAGCACCATTATTCAAATCATGAACAAGACCATCTTGGCCTTGGCTTAACTAGAGACTTTCTTGGCGTTGGCGGATTCACCAAGTTCATCAATCATCCAATGATGGCATCCCATCATTCCCTTCTCACCCTTCCAACCAATCCTCCTCATCATCACTTCACTCCATTGCCTCCACATCAAGAATGA 1182 0.4721 MMMLSSSEAFSSAPPTSPSSSLLHQVHDPNPNNNPNPNSKPVKRKRTQPGRPDPEAEVIALSPKSLMATNRFVCEICKKGFQRDQNLQLHRRGHNLPWKLKQRDKDELLRKKVYVCPEKTCVHHHASRALGDFTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCHCGTLFSRKDSFLTHRAFCQALPTPNNYNGLIGGSVSMAVAEAPSSSLWFDQTMNVLGSPSPWMNNNNNVLVLKREEEEKLYSASSWSSTFVGHMSATALLQKATQMESITSMVSNNNNNALGFMLSSSSSQPNSIGCGAAFSSFNSNSSNLLLQHHYSNHEQDHLGLGLTRDFLGVGGFTKFINHPMMASHHSLLTLPTNPPHHHFTPLPPHQE 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271965g00016 393 SMART c2h2final6 149 169 IPR013087 -
Stsc271965g00016 393 SMART c2h2final6 72 94 IPR013087 -
Stsc271965g00016 393 SMART c2h2final6 114 144 IPR013087 -
Stsc271965g00016 393 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Stsc271965g00016 393 MobiDBLite consensus disorder prediction 1 43 - -
Stsc271965g00016 393 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 365 IPR031140 -
Stsc271965g00016 393 SUPERFAMILY beta-beta-alpha zinc fingers 71 169 IPR036236 -
Stsc271965g00016 393 Gene3D Classic Zinc Finger 68 95 - -
Stsc271965g00016 393 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Stsc271965g00016 393 MobiDBLite consensus disorder prediction 1 55 - -
Stsc271965g00016 393 FunFam protein indeterminate-domain 12-like 51 120 - -
Stsc271965g00016 393 Gene3D Classic Zinc Finger 106 198 - -
Stsc271965g00016 393 FunFam protein indeterminate-domain 5, chloroplastic-like 127 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271965g00016 Stsc-Chr271965 84825 86743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271965g00016 39 238 IDZ Gene Family AT5G03150 71.500 8.59e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc271965g00016 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271965g00016 K25870 - adu:107461721 390.578