Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271965g00011 ATGATTTGGCCATTTGAGGTGAATCAGATTGGTGCTATATTTGGATTGGTGAGAGCTGTAGTTTGCAAAATGATCAGTTTCTGTAATTGCTTTGGGATAATCAAGAAAGAAAAAAATGAAAGGGCTACGCATGGGGTAAAAAGCTTTTTCTCCCGGGGGTTGTTGCCTGGAGAAAGAGAAGAGGAAAATGTCTCATATAGTGGTGAGTTTACTAGTAACACCACCAGTGGAGATGAAACTGACAGCCAGCCTCGAGCCAACCGGTCGGAGGAGATTTTGAACTTGAGAGCAGAGAATGACATGGTTTGTAGGCGGGCTCCTGTTAAGGAGACCAACAAACTTGTTCGTGCAGAGGATGAAGATGGGAACAAGATGATCAATGAGTATGTTCGAGAGTACAGGATTGGTTCAGGTAGCTATGGCAAAGTGGTTCTCTATCGAAGTGTTGTAGATGGAAAGCACTATGCAATTAAGTCCTTTCATAAGTCCCATTTGCTAAAGCTTCGAGTTGCAGGCTCTGAGACTGCCATGTCTGATGTTCTGCGTGAGGTACTTATTATGAAAATGGTGGAACACCCCAATATAGTCAACCTCATTGAGGTGATTGATGACCCAGAATCAGATTGCTTCTACATGGTGCTGGAATATGTGGAGGGCAAATTTATTTGTGAGGGCTCGGGTCGTGGTTGTGCCTTGGGGGAAGACACTGTTAGGAAATACTTGCGTGATATAGTATCAGGATTAAGATATCTTCATGATCATAATATAATACATTTGGACATCAAACCTGATAATTTGTTGATTACTCGTGAGGGTAAAGTCAAGATAGGGGATTTCAGCGTCAGCCAGGCTTTTGAGGATGATAATGATATACTCTATCGATCGCCCGGCACCCCTGTTTTCTCTGCACCAGAATGTTGTGCAGGTGGTAGGTATCATGGTAAAGCTTCAGACACATGGGCTGTAGGAGTTACTTTGTACTGTATGATAATGGGTGAATACCCGTTTCTCGGAAAAGCGCTTCCAGATACATATGAAAAAATACTCAATAATCCATTAGTACTCCCGGATGACATTAATCCACAGTTAAAGAACTTGATTGAAGGACTACTTTGCAAAGATCCAAAAGCAAGGATGACATTGAATGAAGTTGCAGAGCATAGGTGGGTTATTGGAGATGATGGACCAATTAGTGAATACTTGTGTTGGTGCAAACAGAAGAGAGTTGTGCTGGAACAACAACATTAG 1248 0.4223 MIWPFEVNQIGAIFGLVRAVVCKMISFCNCFGIIKKEKNERATHGVKSFFSRGLLPGEREEENVSYSGEFTSNTTSGDETDSQPRANRSEEILNLRAENDMVCRRAPVKETNKLVRAEDEDGNKMINEYVREYRIGSGSYGKVVLYRSVVDGKHYAIKSFHKSHLLKLRVAGSETAMSDVLREVLIMKMVEHPNIVNLIEVIDDPESDCFYMVLEYVEGKFICEGSGRGCALGEDTVRKYLRDIVSGLRYLHDHNIIHLDIKPDNLLITREGKVKIGDFSVSQAFEDDNDILYRSPGTPVFSAPECCAGGRYHGKASDTWAVGVTLYCMIMGEYPFLGKALPDTYEKILNNPLVLPDDINPQLKNLIEGLLCKDPKARMTLNEVAEHRWVIGDDGPISEYLCWCKQKRVVLEQQH 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271965g00011 415 ProSitePatterns Protein kinases ATP-binding region signature. 135 158 IPR017441 GO:0005524
Stsc271965g00011 415 FunFam Serine/threonine-protein kinase Ssp1 123 225 - -
Stsc271965g00011 415 MobiDBLite consensus disorder prediction 66 82 - -
Stsc271965g00011 415 Pfam Protein kinase domain 129 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271965g00011 415 Coils Coil 411 415 - -
Stsc271965g00011 415 MobiDBLite consensus disorder prediction 60 86 - -
Stsc271965g00011 415 ProSiteProfiles Protein kinase domain profile. 129 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271965g00011 415 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 79 392 - -
Stsc271965g00011 415 FunFam Serine/threonine-protein kinase GRIK2 119 415 - -
Stsc271965g00011 415 SUPERFAMILY Protein kinase-like (PK-like) 125 402 IPR011009 -
Stsc271965g00011 415 SMART serkin_6 129 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271965g00011 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Stsc271965g00011 415 Gene3D Transferase(Phosphotransferase) domain 1 119 412 - -
Stsc271965g00011 415 CDD STKc_LKB1_CaMKK 135 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271965g00011 Stsc-Chr271965 55895 60457 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271965g00011 135 397 CBL-interacting serine-threonine protein kinases AT5G35410 34.221 2.43e-43 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Stsc271965g00011 Pkinase 9.8e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271965g00011 K00908 - gmx:100776013 602.053