Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271965g00010 ATGATCAGTTTCTGTAATTGCTTTGGGATAATCAAGAAAGAAAAAAATGAAAGGGCTACGCATGGGGTAAAAAGCTTTTTCTCCCGGGGGTTGTTGCCTGGAGAAAGAGAAGAGGAAAATGTCTCATATAGTGGTGAGTTTACTAGTAACACCACCAGTGGAGATGAAACTGACAGCCAGCCTCGAGCCAACCGGTCGGAGGAGATTTTGAACTTGAGAGCAGAGAATGACATGGTTTGTAGGCGGGCTCCTGTTAAGGAGACCAACAAACTTGTTCGTGCAGAGGATGAAGATGGGAACAAGATGATCAATGAGTATGTTCGAGAGTACAGGATTGGTTCAGGTAGCTATGGCAAAGTGGTTCTCTATCGAAGTGTTGTAGATGGAAAGCACTATGCAATTAAGTCCTTTCATAAGTCCCATTTGCTAAAGCTTCGAGTTGCAGGCTCTGAGACTGCCATGTCTGATGTTCTGCGTGAGGTACTTATTATGAAAATGGTGGAACACCCCAATATAGTCAACCTCATTGAGGTGATTGATGACCCAGAATCAGATTGCTTCTACATGGTGCTGGAATATGTGGAGGGCAAATTTATTTGTGAGGGCTCGGGTCGTGGTTGTGCCTTGGGGGAAGACACTGTTAGGAAATACTTGCGTGATATAGTATCAGGATTAAGATATCTTCATGATCATAATATAATACATTTGGACATCAAACCTGATAATTTGTTGATTACTCGTGAGGGTAAAGTCAAGATAGGGGATTTCAGCGTCAGCCAGGCTTTTGAGGATGATAATGATATACTCTATCGATCGCCCGGCACCCCTGTTTTCTCTGCACCAGAATGTTGTGCAGGTGGTAGGTATCATGGTAAAGCTTCAGACACATGGGCTGTAGGAGTTACTTTGTACTGTATGATAATGGGTGAATACCCGTTTCTCGGAAAAGCGCTTCCAGATACATATGAAAAAATACTCAATAATCCATTAGTACTCCCGGATGACATTAATCCACAGTTAAAGAACTTGATTGAAGGACTACTTTGCAAAGATCCAAAAGCAAGGATGACATTGAATGAAGTTGCAGAGCATAGGTGGGTTATTGGAGATGATGGACCAATTAGTGAATACTTGTGTTGGTGCAAACAGAAGAGAGTTGTGCTGGAACAACAACATTAG 1179 0.4241 MISFCNCFGIIKKEKNERATHGVKSFFSRGLLPGEREEENVSYSGEFTSNTTSGDETDSQPRANRSEEILNLRAENDMVCRRAPVKETNKLVRAEDEDGNKMINEYVREYRIGSGSYGKVVLYRSVVDGKHYAIKSFHKSHLLKLRVAGSETAMSDVLREVLIMKMVEHPNIVNLIEVIDDPESDCFYMVLEYVEGKFICEGSGRGCALGEDTVRKYLRDIVSGLRYLHDHNIIHLDIKPDNLLITREGKVKIGDFSVSQAFEDDNDILYRSPGTPVFSAPECCAGGRYHGKASDTWAVGVTLYCMIMGEYPFLGKALPDTYEKILNNPLVLPDDINPQLKNLIEGLLCKDPKARMTLNEVAEHRWVIGDDGPISEYLCWCKQKRVVLEQQH 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271965g00010 392 MobiDBLite consensus disorder prediction 37 63 - -
Stsc271965g00010 392 CDD STKc_LKB1_CaMKK 112 367 - -
Stsc271965g00010 392 FunFam Serine/threonine-protein kinase Ssp1 100 202 - -
Stsc271965g00010 392 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524
Stsc271965g00010 392 FunFam Serine/threonine-protein kinase GRIK2 96 392 - -
Stsc271965g00010 392 Pfam Protein kinase domain 106 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271965g00010 392 Gene3D Transferase(Phosphotransferase) domain 1 96 389 - -
Stsc271965g00010 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Stsc271965g00010 392 ProSiteProfiles Protein kinase domain profile. 106 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271965g00010 392 SUPERFAMILY Protein kinase-like (PK-like) 102 379 IPR011009 -
Stsc271965g00010 392 SMART serkin_6 106 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271965g00010 392 MobiDBLite consensus disorder prediction 43 59 - -
Stsc271965g00010 392 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 56 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271965g00010 Stsc-Chr271965 55895 60457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271965g00010 112 374 CBL-interacting serine-threonine protein kinases AT5G35410 34.221 1.33e-43 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Stsc271965g00010 Pkinase 8.3e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271965g00010 K00908 - gmx:100776013 600.127