Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271965g00008 ATGGGAAACATCGCAGAGCCTCCTGGTTGGCACCTGAACAGGGTTCTTCCTCCTCTCCTCAGCATGGGGATCAAACAAATCGGAGAAAACAGTGACAGTAAGCTGCCTTTGTCTCTGCCAACAGCATTGCGGTTATGTTGTATGCCAAAGAGAACTTTAGATGGTACACTCATAGCAGTAAAGAACAGCTTTCTCTTTCAGCAAGGAACAGAACCACTTTCATGCAAACGAACAGTTTCACTTCCACTTCACGGGTTGGATGATTCAATGGGATTGAATGAAGATATAGCATCATCAGAAGAGGCAACATCTCATGATTATGTAGCCATAAAGATGCCAATGACACCAACTCATAAGAGAGTCAATTTTCTTGTCACTTCTCATTCTGTTGATGCTCCAATCAATACTAGTTCATCTTCTTCAGGATCCTCATCTAGAGCCAAATCATCATCCATAAGAAACATCTTGCCAAAATTCACCTTAAGGAATCATAGGACACCTAATTCGGATATCGAAAAGGCTACTATTTTAGCTCCAGAATGTTCCTCTTTAGATCATCATCATCAAGAGAAAGACAAGTCTTCAATCTCTAGATCAGTGTCCCTCACTAAGATGTTTACAACTAAGATCAAGAGAACTTCATCATTACCTGTAGAAGAATTGGGTCATGCAAACACAGATTCTTCTCAGGCTGCAACTCTTGCTGCTTCTCCATTTAGGATAGAGAGTCAGGGGACAACCATAGCTCGATCTCGTTCAGTACCTATCAATACCAAAGAGAAAGGAATTAGGAGAATGGATTCATTCTTCCGTGTAATTCCTTCCACTCCTCTATTAAAAGAAGGGAATGATTGGTTAACCAAGTACACAACAAAAGATACTGAAAATGATGATGGTGATGATGATGATGATGATGATGATGATGATGGAGAAGATATAGCTGAGGAAGAAGCAGTGTGTAGAATTTGTCTGATTGATCTGTGTGAAGGAGGGGAGACATTGAAGATGGAATGCAGCTGCAAAGGTGCACTTGCTCTTGCTCACAAAGATTGTGCCATTAAATGGTTCACAATCAAGGGCAACAAGACCTGTGATGTCTGCAAGGAAGAGGTTAGGAACCTCTCTGTCACTCTCTTACGGATCCGAAACGTTCAAACTCAGAATAATACTGGAACAAGCTCTCAGCAGCAGCATGATGATTACAGGCATGTCTAG 1215 0.414 MGNIAEPPGWHLNRVLPPLLSMGIKQIGENSDSKLPLSLPTALRLCCMPKRTLDGTLIAVKNSFLFQQGTEPLSCKRTVSLPLHGLDDSMGLNEDIASSEEATSHDYVAIKMPMTPTHKRVNFLVTSHSVDAPINTSSSSSGSSSRAKSSSIRNILPKFTLRNHRTPNSDIEKATILAPECSSLDHHHQEKDKSSISRSVSLTKMFTTKIKRTSSLPVEELGHANTDSSQAATLAASPFRIESQGTTIARSRSVPINTKEKGIRRMDSFFRVIPSTPLLKEGNDWLTKYTTKDTENDDGDDDDDDDDDDGEDIAEEEAVCRICLIDLCEGGETLKMECSCKGALALAHKDCAIKWFTIKGNKTCDVCKEEVRNLSVTLLRIRNVQTQNNTGTSSQQQHDDYRHV 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271965g00008 404 ProSiteProfiles Zinc finger RING-CH-type profile. 312 374 IPR011016 GO:0008270
Stsc271965g00008 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 377 IPR013083 -
Stsc271965g00008 404 MobiDBLite consensus disorder prediction 296 311 - -
Stsc271965g00008 404 Pfam RING-variant domain 320 367 IPR011016 GO:0008270
Stsc271965g00008 404 SUPERFAMILY RING/U-box 316 371 - -
Stsc271965g00008 404 MobiDBLite consensus disorder prediction 289 311 - -
Stsc271965g00008 404 CDD RING_CH-C4HC3_MARCH 320 368 - -
Stsc271965g00008 404 PANTHER OS02G0165000 PROTEIN 99 399 - -
Stsc271965g00008 404 SMART ringv_2 319 368 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271965g00008 Stsc-Chr271965 39627 45488 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271965g00008 306 375 C3H Transcription Factor Family AT2G37950 46.479 2.86e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271965g00008 - - cam:101488558 345.125