Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271965g00003 ATGCTTGTTGACAATGCTATTGCTATGGGGGATAAAGTTGCCCTTACTCATACTTATTCAACTTTTATACCTCAGCAAATTATATGCTATGAATTATTGGACAAACCATTTTATTTGACTGCAGCTGAGGCTTTGTTCACTTTGAAAGGTTCACTTGGCAGATCACAGCAATTGGGATGCAGCATTGTGAAGTATCCGTGTCGCCTTAACTGCTATAAACTAAAAGATCCAGGTGGAATAGCAGCAAAGGTGGATGGAAACAATGACATTCCAACACTTACACCTGTTCAAGATGCTCAAGTTAACAAGCAGGGTGGAAGAAGGGCTGCTGCCGCCGCCACACTTGGCGGGGTTGCTGCCGCCTTAATTGTCATTGTAATTGTGGTAGTTGTCTATATCTGCTTGATGCGTCTTAAGAGAATCATGAGGCAAACATCTGAGACTGCTTCTTCTATGCCATCCCCCACAGTTGAGATGGGAAGAAGCAACGACTCGGCGCAAATAGACGAATTGTGTCCACACATTGCAAGACAATTAACAATTTTAGAACTAGAACAAGCTACAAGAAGTTTCAATCAAGGTAATATTGTGGGTGAAGATAGATTTGGTTTGGTTTACCAGGGCTTGCTTCAAGATGGATCTATTGTGGCTATAAAGAGGCGAATATTTTCTCTAATGCAGGATTTCACTTGCCAGGTGAGGCAGATATCATGCATTCACCATATCCATCTTGTGAAGCTTATAGGCTACTATGAAGATAGCTATCAACAAATACTAGTGTATGAACATCTCCCTAATGGCCATGTAGGGAATCACCTATATGATAGTGAAGGTTTTCCTATTGGAAAGTTAGACTTGTGGAGAAGGTTATCCATTGCTTTAGGTGCATCCAAAGGACTTGAACATCTTCACAGTTTGGACCCTCCTTTGGTTCACACCAATTTCAAAACTAGAAATGTTCTTTTAGATGAGAGTTACACTGCCAAGGTTTCGGGTTACGGATTCGGCACGTTGCAAAGACAAGCTGATCAGGCTGCAGCCTCATCATGCTTAGATTGCTTTCTTGATCCAGAGTTATGTTCATCAGAAAACTATAGAGAGGAGAGTGATGTATACAGCTTTGGAGTCTTTTTACTAGAGTTGATTAGTGGCTGTGAAGTTTACAACAAAAACATGTCAATGGCAGAAGAGAACCTAGTATTCCAGGCAAAGGCAAAGGCAAAGGATAGTGAGGGATTGGAGAAGTTCATTGACATAACATTAGGAGAGCATGAAAAGCATGGTGCTAGGAGGATGATGAGGTTGGCATTGTTATGCATAGGCATGAGTTATACAAGGCCATCAATGGGGCAAATAGTGCAAGAGCTAGAGCGGATTCAAAGAGAGATTGCTCCTTTGTATTCACAAGTCAATGAGGACGTTGCTGTGGTTACTCTAGGGAGTGAACTTTTTCAATAA 1458 0.415 MLVDNAIAMGDKVALTHTYSTFIPQQIICYELLDKPFYLTAAEALFTLKGSLGRSQQLGCSIVKYPCRLNCYKLKDPGGIAAKVDGNNDIPTLTPVQDAQVNKQGGRRAAAAATLGGVAAALIVIVIVVVVYICLMRLKRIMRQTSETASSMPSPTVEMGRSNDSAQIDELCPHIARQLTILELEQATRSFNQGNIVGEDRFGLVYQGLLQDGSIVAIKRRIFSLMQDFTCQVRQISCIHHIHLVKLIGYYEDSYQQILVYEHLPNGHVGNHLYDSEGFPIGKLDLWRRLSIALGASKGLEHLHSLDPPLVHTNFKTRNVLLDESYTAKVSGYGFGTLQRQADQAAASSCLDCFLDPELCSSENYREESDVYSFGVFLLELISGCEVYNKNMSMAEENLVFQAKAKAKDSEGLEKFIDITLGEHEKHGARRMMRLALLCIGMSYTRPSMGQIVQELERIQREIAPLYSQVNEDVAVVTLGSELFQ 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271965g00003 485 Gene3D Transferase(Phosphotransferase) domain 1 264 478 - -
Stsc271965g00003 485 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 120 459 IPR047117 -
Stsc271965g00003 485 Gene3D Phosphorylase Kinase; domain 1 154 263 - -
Stsc271965g00003 485 SUPERFAMILY Protein kinase-like (PK-like) 168 466 IPR011009 -
Stsc271965g00003 485 Pfam Protein tyrosine and serine/threonine kinase 193 397 IPR001245 GO:0004672|GO:0006468
Stsc271965g00003 485 ProSiteProfiles Protein kinase domain profile. 191 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271965g00003 Stsc-Chr271965 22578 24885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271965g00003 101 463 Receptor kinase-like Gene Family AT4G02010 33.333 4.69e-52 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Stsc271965g00003 PK_Tyr_Ser-Thr 2.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271965g00003 - - aprc:113855951 607.446