Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271964g00005 ATGCCGCGCCACCGTGGCTCCGCCGTGTCGAATCCGAGCACTTTCTTCGTGTTTAGCTTTGTGCTGAAGCTTATGGTGGTGTGTGCGGCGGAGATACAACCTCAGCGCCATTCTCCCGACCTACATTGGTATCCGGGGACCGCCACGTGGTATGGTGACCCTGAAGGTGACGGCAGCACTGGTGGAGCATGTGGGTATGGGACAATGGTGGACGTGAAGCCATTGAGGGCTCGGGTGGGTGCAGTGGGCCCACTATTGTTCATGAACGGGGAAGGGTGCGGGGCGTGTTACAAGGTGAAGTGCCTTGACTCATCAATATGCTCAAGGAGAGCTGTGACGGTTGTTATCACCGACGAGTGTCCCGGCTGCCCATCTGACCGGACACATTTCGACCTTAGTGGTGCCGCCTTTGGCCGCCTCGCTATTGCCGGCGAGAACGGTCAGATCAGGGACCGTGGTCAAATCCCCGTTATTTACCGAAGAACACCTTGTAAATATCCTGGAAGAAAAGTTGCCTTCCATGTCAACGAAGGTTCCACACCCTTTTGGCTATCACTTCTTGTTGAGTTTGAAGATGCAGAGGGAGATTTGGCCTCCATGCATATAAGAGAGGGAGGATCAAGTGAGTGGCTGCAGATGAATCATCTATGGGGTGCAAATTGGTGCATTATTGGAGGTCCTTTAAGAGGACCATTCTCAGTGAAACTAACCACTTCCTCTGGAAGAACCCTCTCTGCAAGAGATGTTATTCCTACCAATTGGGTTTCTAAGGCCACTTACACTTCTCGTCTCAATTTCTACACCTAA 807 0.5217 MPRHRGSAVSNPSTFFVFSFVLKLMVVCAAEIQPQRHSPDLHWYPGTATWYGDPEGDGSTGGACGYGTMVDVKPLRARVGAVGPLLFMNGEGCGACYKVKCLDSSICSRRAVTVVITDECPGCPSDRTHFDLSGAAFGRLAIAGENGQIRDRGQIPVIYRRTPCKYPGRKVAFHVNEGSTPFWLSLLVEFEDAEGDLASMHIREGGSSEWLQMNHLWGANWCIIGGPLRGPFSVKLTTSSGRTLSARDVIPTNWVSKATYTSRLNFYT 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271964g00005 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 169 IPR007112 -
Stsc271964g00005 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 262 IPR007117 -
Stsc271964g00005 268 SMART dpbb_1 79 159 IPR007112 -
Stsc271964g00005 268 SUPERFAMILY Barwin-like endoglucanases 42 168 IPR036908 -
Stsc271964g00005 268 Pfam Lytic transglycolase 84 157 IPR009009 -
Stsc271964g00005 268 Pfam Expansin C-terminal domain 171 251 IPR007117 -
Stsc271964g00005 268 CDD DPBB_EXPB_N 43 164 - -
Stsc271964g00005 268 Gene3D - 165 263 IPR036749 -
Stsc271964g00005 268 FunFam Expansin B3 29 165 - -
Stsc271964g00005 268 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Stsc271964g00005 268 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Stsc271964g00005 268 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576
Stsc271964g00005 268 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Stsc271964g00005 268 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576
Stsc271964g00005 268 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Stsc271964g00005 268 SUPERFAMILY PHL pollen allergen 169 262 IPR036749 -
Stsc271964g00005 268 FunFam Beta-expansin 3 166 267 - -
Stsc271964g00005 268 Gene3D - 28 164 IPR036908 -
Stsc271964g00005 268 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576|GO:0019953
Stsc271964g00005 268 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576|GO:0019953
Stsc271964g00005 268 PRINTS Major pollen allergen Lol pI signature 119 134 IPR005795 GO:0005576|GO:0019953
Stsc271964g00005 268 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576|GO:0019953
Stsc271964g00005 268 PRINTS Major pollen allergen Lol pI signature 238 255 IPR005795 GO:0005576|GO:0019953
Stsc271964g00005 268 PANTHER EXPANSIN-B3 25 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271964g00005 Stsc-Chr271964 20744 24989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271964g00005 12 204 Expansin Gene Family AT4G28250 68.394 2.94e-96 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271964g00005 K20628 - gmx:100810778 483.411