Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271964g00003 ATGGGTGTTCTCCACTCTACACTCCTCTGCTTCATTTTACTACATTCATGGAAGATTGCAGCTTACAGTGATGAAGATTGGAAGAAAGCCACCGCAACATTCACCAAAGACACTGATGAGGGATCTCTCATTAATGGAGCTTGTGGGTATGGAGATATTCACAAGGCTAGTTATGGAAAACACAGTGCTGGGTTGAGCACAATTTTGTTCAACAGAGGGAGTGCTTGTGGGGCTTGCTATGAGATAAGGTGTGTTGACCACATCTTGTGGTGTGTTATGGGAAGCCCTTCTATTGTTGTCACTGTTACAGATTTCTGTGCTCCAAATTATGGCCTTTCAGTTGATTATGGTGGATGGTGCAACTTTCCAAGAGAGCATTTTGAGATGTCACAGCCTGCATTTTCTCAAATTGCAAAGAGTAAAGCTGATATTGTTCCAATTCAGTATAGAAGAGTAAAGTGTCAAAGAAGTGGTGGCCTAAAATACACAATGAGTGGCAGTTCTCACTTCTATCAAGTTCTGGTAACCAATGTAGGACTTGATGGTGAGGTGGTTGCTATGAAAGTGAAGGGATCAAGAACAGGGTGGATACCGATGGCAAGGAACTGGGGGCAAAACTGGCATTGCAATGTCAACCTTCAGCGACAACCTTTGTCGTTCGAGGTAACTGTCAGCAGTGGAAGAACACTAACATCTTACAATGTTGCCCCGGCGAATTGGCAGTTTGGACAGACATTTGAAGGGAAACAATTTTCAGAATGA 762 0.4331 MGVLHSTLLCFILLHSWKIAAYSDEDWKKATATFTKDTDEGSLINGACGYGDIHKASYGKHSAGLSTILFNRGSACGACYEIRCVDHILWCVMGSPSIVVTVTDFCAPNYGLSVDYGGWCNFPREHFEMSQPAFSQIAKSKADIVPIQYRRVKCQRSGGLKYTMSGSSHFYQVLVTNVGLDGEVVAMKVKGSRTGWIPMARNWGQNWHCNVNLQRQPLSFEVTVSSGRTLTSYNVAPANWQFGQTFEGKQFSE 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271964g00003 253 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Stsc271964g00003 253 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Stsc271964g00003 253 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Stsc271964g00003 253 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Stsc271964g00003 253 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Stsc271964g00003 253 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Stsc271964g00003 253 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Stsc271964g00003 253 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Stsc271964g00003 253 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Stsc271964g00003 253 Gene3D - 13 155 IPR036908 -
Stsc271964g00003 253 SMART dpbb_1 62 149 IPR007112 -
Stsc271964g00003 253 SUPERFAMILY Barwin-like endoglucanases 26 177 IPR036908 -
Stsc271964g00003 253 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Stsc271964g00003 253 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Stsc271964g00003 253 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Stsc271964g00003 253 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Stsc271964g00003 253 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Stsc271964g00003 253 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Stsc271964g00003 253 CDD DPBB_EXPA_N 26 154 - -
Stsc271964g00003 253 PANTHER EXPANSIN-A15 17 251 IPR002963 GO:0009664
Stsc271964g00003 253 Pfam Lytic transglycolase 63 149 IPR009009 -
Stsc271964g00003 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 159 IPR007112 -
Stsc271964g00003 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Stsc271964g00003 253 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Stsc271964g00003 253 Pfam Expansin C-terminal domain 162 237 IPR007117 -
Stsc271964g00003 253 Gene3D - 160 251 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271964g00003 Stsc-Chr271964 12961 14752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271964g00003 4 251 Expansin Gene Family AT4G38210 60.400 2.26e-118 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271964g00003 - - ahf:112789777 498.049