Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271963g00008 ATGGCAAATTCAGTTGAAGAAATAGAAACTGCTTCTGAGACCATCAGCAACAACAACAGAAGCAGCAGTAGTAGTTATGATGTTTTCCTGAGTTTTAGGGGCGAAGACACGCGTTGTGCCTTCACTGGTTATCTCTATGATGCCTTGTGCCGCAAGGGAATCAAAACCTTCATAGATAGCGAGGATCTGAGGGTAGGGGAAACGACTCGACCTCAACTCTTTCGTGCCATTGAAGAATCCAAGGTTTCAATAGTTGTTTTCTCTGAGAACTATGCAGACTCCACTTGGTGTCTTGATGAACTTGCCAAGATCCTCGAGTGTCAGAAGGAAAAAGGCCAGCCTGTGTTTCCCATATTCTACAAAATAGAGCCCTCAGATGTACGGTATCAGAGAAATAGTTATAAACTCGCCATGGATGCTCATGAAAATAAGTTTGGTAGTTCATCTGAGAAGGTGCAGAGGTGGAAGGAAGCCTTGCGTGGAGTATCTAACATAGCAGGATATCATTTAAAAGAAGGGTTCGAATTCAAGTTCATTCAAGATATTGTTTGCAAGGTTGCCACAATAATATCTCCTAAACAGATACCCGAGGAGGAGAATGTAGTTGGACTGCAGTTTCGAGTTGCAGAATTGAAGTCAATCTTAGATATTGAGTCTAACATGAACACTTTCATGTTGGGGATCATCGGAACCGGTGGAATTGGCAAAACAACCCTTGCTAAGGCTTTGTATAACTCTATTTGCAATGAATTTGAGGGTGCTTGTTTTGTTTCCAATGTCAGAAAAACTTCCAACCAAGATAAGGGAAAAATATGGCTGCAAAAGAAGATCCTGTCAGATATTCTTGAGGTGCAAAAGATCAAGTTGGATAGTACTGAAAAAGGAATGTATACAATAAAAGCCCGTCTCAATGCAAAAAGAGTTCTTATAGTTCTTGATGATGTTGATAAGATAGAACAGTTGAAAGAATTAACAGGAGGATGTGACTGGTTTGGTCTTGGAAGTAGAATCATTATAACAACAAGAGATAAACATTTGCTGGTAGCTCACCAGATCAAAAGGATTTATGAAATGGAAATGATGAATGATCGAGAATCACTCGAGTTGTTTTGTCAGAATGCCTTCAAGATGAGTACTCCTGCTAGAAACTATGAGGACTTGTCGAATCGAGCAATTCGTTATGCGAAAGGCCTTCCATTAGCTTTGAAAGTCATAGGCTCAGAGTTGATTGATAAAGATGTGCATTTTTGGGAGTCTTCTTTGGACAAATATAAGAAGAATCTTCATGGAGACATCCAAAATATTCTTAGAGTAAGTTATGACAGTCTTGAATGCAACCAAAAGGAAATTTTCCTTGACATTGCATGTTTTTTCAATGGGAAGAGATTGAAATATGTTAAAAGAATTCTAGATGGCTGTGACTTCTACACAGACAGTGATATTGAAACACTAGTTGATAAATCTCTTATAACCATTGAAGACGGTTACTTGAGGATGCATGATCTAATACAAGACATGGGGAGAGAGATTGTTAAGCAAGAAGCACCAAAAGAGCCTGGGGAACGCAGTAGGTTATGGCTTTGTGAAGATGTTCTTGAAGTACTAACAGAAAATAAGGGAAATAATAAAACTGAAGGAATGAAACTAGATTGCTATGAAGAAGTCAAGTGCTCTGATAATACCTTGGAAATGATGAAGAAACTTAGAGTTCTCATTGTTAGCAATGGAAGCTTCTCATCGAAGCATATTCGTCTTCCGAACACATTAAGACTTGTTGATTGGAAAGGGTACCCTTCAACATCTTTTCCGCCAGCAGGATTTAATCCCAGGAAAATTGCTGCTATCAATTTAACTTGTAGTTTTCTTGTATTAAAGAGGTCATATCAGACGTTTGATCAATTGGCCTACATGAACTTCTCCCATTGCCAGTCCATTACTTCATTTCCTAATGTGTGTGGAGCCCCAAATTTAAGAGAATTGGTACTTGATGGATGCAAGCAACTGGTTAAGATTCATTATTCAGTTGGATTTCTCTCTAAGCTTGTTTATTTGAGTGCTTCAGGGTGCACTCAACTAGAGAGTTTTCTGCCAGAAATCTTTCTACCATCCCTTGAATATCTTTCACTTGACTTCTGTACAAGACTTAAACATTTGCCAAGGGTGACTGGAAAAATGGAAAAGCTATCAAAGATTTCTATAAAACGTACTGTTAGAGAGCTTCCGCTATCTTTCCGTCATTTTGGGCTTCAATATTTAGACATGACAAATTGTGAGCATCTGGAATATGTATTTCCAAGGTGGTTTCCAAAGCTTGAAACATTGAAAATTGGAGGGTGTTGTCAGTTTCGGAAATCATTAAATCTACTCCCTTCAGAAAAATATCCTTTGATGAGTTTGCATCTCAACAGTGCAAGTTTATGGGATGATGATCTTCCCATAATTTTTAGGGTGTTTCCTGACTTAAGAGACTTAATTGTGCCTTTTAACTGCTTTCAGTCAATCCCGTTGAATATTAAGGACCTCATTTCCTTGACAAGTCTTGATGTTAGTTCCTGTCTAAAACTTAGAGACATTCCACCACTTCCTTGTAGCATTCAAAAAGTAGATGCAAGACACTGCAATTACTTAACGCCAGACTCATCATACATTCTTTGGTCACAGATTCGCAAAGAGATAAAAGGATTACAAATTGTAATGCCAAAGACACAGATTCCAGAATGGTTGGACTATTGTGACTCGGGAGGGATCCCCTTCTTATGGGCACGTGGCAAGTTCCCCGTAATGGCTCTCGTGTTGGAGTTTGGGGAAATGATGTACCAAGATGTTAATCTGCATTTGTTCATTGACGATGAGCATATATACAGCCAGCGCCCACAAACACAAAGGCATAGTTTTGCTGTTGCAGAGGATCACGTGCTCTTGTGTGACCTGCGACTATTATTCAGTGATGAAGAATGGAAGAGGCTTGATGCGCGAATTGGAAATAATAAGGATTGGAAAGCAGTGCAGGTGAAGTGTGAAGCAGGCTTGGCCTTAAGACAGTGGGGAATTTATGTGTACAAGAATGAAACAAACATGGATGATATACAATTCATGTGTCCTTATTATTATCATGAAGAACAACAAGATTCATCCTTGGAGGAAGAAACTGTAGCGGCAGTTTCTAGTATAAAGGAAGAACTATCTTGCTCTGAATTTGCTCCTAATGATGATTCAAATCATGATATTGGTTCCACGCGAACTTATAGATGTAGCGTTTGTTGTTCGGCATTATTGTCAAGCTTCAAGAAGCTACTTTGCTGTTGTAATGAAGAGAGAGGAACGGAGAGTGAAAGCAGAAGGAATGAGGAGATGATGATAATAGAAGAATTCCAAAGAGAGATGGAGAGAGGGGAGATAGGGGAGAAAGAAATCGCAGGGCGGGAGGAAGAGGAACAGGAAAAGAGAAGAGAGGAGAAGGGAAAAAGTGATGGAGAGATTGGAGAGATAGAAGAGAGGAGGAGGGAGGAGGAGGAGGAGATTGAAATGAAAAGAAGAAAGGCAGTGTTGAGACGAGAGAGGATGAGAGAAAGGAAAGGGAAAAAAAGTACGGAGGGAGAAGAGACTGAGAATGAGAATAGAGAGGAAAAAGCAGTTGGATGTGGAAAATGTGATGTCTTCTTCACGTCATGCTCCTTTCTCACCAAACCTCCAAATTGTGGTGGAAAATTTGAAGAGGCTTATGAATCGCGGAGAAGACACGAGCTCCGACTCGGACAATAA 3762 0.3974 MANSVEEIETASETISNNNRSSSSSYDVFLSFRGEDTRCAFTGYLYDALCRKGIKTFIDSEDLRVGETTRPQLFRAIEESKVSIVVFSENYADSTWCLDELAKILECQKEKGQPVFPIFYKIEPSDVRYQRNSYKLAMDAHENKFGSSSEKVQRWKEALRGVSNIAGYHLKEGFEFKFIQDIVCKVATIISPKQIPEEENVVGLQFRVAELKSILDIESNMNTFMLGIIGTGGIGKTTLAKALYNSICNEFEGACFVSNVRKTSNQDKGKIWLQKKILSDILEVQKIKLDSTEKGMYTIKARLNAKRVLIVLDDVDKIEQLKELTGGCDWFGLGSRIIITTRDKHLLVAHQIKRIYEMEMMNDRESLELFCQNAFKMSTPARNYEDLSNRAIRYAKGLPLALKVIGSELIDKDVHFWESSLDKYKKNLHGDIQNILRVSYDSLECNQKEIFLDIACFFNGKRLKYVKRILDGCDFYTDSDIETLVDKSLITIEDGYLRMHDLIQDMGREIVKQEAPKEPGERSRLWLCEDVLEVLTENKGNNKTEGMKLDCYEEVKCSDNTLEMMKKLRVLIVSNGSFSSKHIRLPNTLRLVDWKGYPSTSFPPAGFNPRKIAAINLTCSFLVLKRSYQTFDQLAYMNFSHCQSITSFPNVCGAPNLRELVLDGCKQLVKIHYSVGFLSKLVYLSASGCTQLESFLPEIFLPSLEYLSLDFCTRLKHLPRVTGKMEKLSKISIKRTVRELPLSFRHFGLQYLDMTNCEHLEYVFPRWFPKLETLKIGGCCQFRKSLNLLPSEKYPLMSLHLNSASLWDDDLPIIFRVFPDLRDLIVPFNCFQSIPLNIKDLISLTSLDVSSCLKLRDIPPLPCSIQKVDARHCNYLTPDSSYILWSQIRKEIKGLQIVMPKTQIPEWLDYCDSGGIPFLWARGKFPVMALVLEFGEMMYQDVNLHLFIDDEHIYSQRPQTQRHSFAVAEDHVLLCDLRLLFSDEEWKRLDARIGNNKDWKAVQVKCEAGLALRQWGIYVYKNETNMDDIQFMCPYYYHEEQQDSSLEEETVAAVSSIKEELSCSEFAPNDDSNHDIGSTRTYRCSVCCSALLSSFKKLLCCCNEERGTESESRRNEEMMIIEEFQREMERGEIGEKEIAGREEEEQEKRREEKGKSDGEIGEIEERRREEEEEIEMKRRKAVLRRERMRERKGKKSTEGEETENENREEKAVGCGKCDVFFTSCSFLTKPPNCGGKFEEAYESRRRHELRLGQ 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271963g00008 1253 SMART till_3 25 165 IPR000157 GO:0007165
Stsc271963g00008 1253 Gene3D Ribonuclease Inhibitor 540 735 IPR032675 -
Stsc271963g00008 1253 Gene3D Ribonuclease Inhibitor 736 911 IPR032675 -
Stsc271963g00008 1253 FunFam Disease resistance protein (TIR-NBS-LRR class) 22 191 - -
Stsc271963g00008 1253 SUPERFAMILY L domain-like 552 884 - -
Stsc271963g00008 1253 Gene3D - 19 187 IPR035897 -
Stsc271963g00008 1253 PRINTS Disease resistance protein signature 839 855 - -
Stsc271963g00008 1253 PRINTS Disease resistance protein signature 225 240 - -
Stsc271963g00008 1253 PRINTS Disease resistance protein signature 302 316 - -
Stsc271963g00008 1253 PRINTS Disease resistance protein signature 395 409 - -
Stsc271963g00008 1253 MobiDBLite consensus disorder prediction 1124 1209 - -
Stsc271963g00008 1253 MobiDBLite consensus disorder prediction 1191 1209 - -
Stsc271963g00008 1253 Coils Coil 1160 1186 - -
Stsc271963g00008 1253 Gene3D - 360 444 IPR042197 -
Stsc271963g00008 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 454 IPR027417 -
Stsc271963g00008 1253 FunFam Disease resistance protein (TIR-NBS-LRR class) 362 444 - -
Stsc271963g00008 1253 Pfam NB-ARC domain 208 443 IPR002182 GO:0043531
Stsc271963g00008 1253 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 26 721 IPR044974 GO:0006952
Stsc271963g00008 1253 ProSiteProfiles TIR domain profile. 24 190 IPR000157 GO:0007165
Stsc271963g00008 1253 MobiDBLite consensus disorder prediction 1 23 - -
Stsc271963g00008 1253 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 168 IPR035897 -
Stsc271963g00008 1253 Gene3D - 188 355 IPR027417 -
Stsc271963g00008 1253 Pfam TIR domain 26 186 IPR000157 GO:0007165
Stsc271963g00008 1253 MobiDBLite consensus disorder prediction 1124 1181 - -
Stsc271963g00008 1253 SUPERFAMILY "Winged helix" DNA-binding domain 431 535 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271963g00008 Stsc-Chr271963 64812 70214 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271963g00008 21 784 WRKY Transcription Factor Family AT4G12020 29.987 5.62e-90 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271963g00008 - - ahf:112771910 1731.07