Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc271963g00007 | ATGGGCAAGACTAGCAAGAAATCAGCTTCCAAAGTTGAGACTGCTCCACCTGTCAAAAAGGGAAAGAGGCAGGCAGATGAGGAACTTGAGAAGCAAGTTAGTTTAAAGAAACAGAAGGTAGAAGAGGCTGCTCAGAAGCAAAAGAAGGAAGCGAAGGTGCAGAAGAAAAAGGAGGAAAGTAGTTCAGATGATTCTTCTTCAGAATCTGAAGATGAGAAACCTGCGCCTAAGGTTGCTGTTGCTTCAAAGCAGCCTGCTAAGAACGGCACTTTAAGTGCCCCTGCAAAGAAAGCCAAGCCAGCTAGTAGTTCTAGCTCTGATGATTCTTCTTCAGAGTCTGAAGATGAGCCTGCAGCTAAGGTTGCAAAGAATGGGCCTCCTCCAGCAAAGAAAGCCAAGCCAGCAAGTAGTTCTAGCTCTGATGATTCTTCTTCAGAATCTGAAGATGAGAAACCTGCACCAAAGGCTGCTCCTGCAAAAAATGGGGCTCCAACAAAGTCAGCCAAGCCAGCTTCCTCTTCAAGTTCTTCGGAATCATCAGATGATGACTCTGACTCTGATGAAGTGCCCAAATCCAAGGTGGTGCCTGCTGCAGCTAAGAATGGATCTGCTTCTGCAAAGAAGCAAAGTGAAAGCTCTGAGTCTGAGGACAGCAGCTCTGATGAGGAAGATGATAAGAAAAAACCAGTAGCCAAATCAGCTGGTGTTCCAACTAAGAAAGTTGAATCCACTGAAAGTTCAGATGATGATTCAAGCGAAAGCTCTGAAGAAGAAAATAATGATGACAGTGACAGTTCAGATTCTGATGATAGCAGCTCAGAAGATGACAAGAAAACTGCTGTCAAGACTGTTTCCAATGCCAAATCAGCACCTGCACCAAAGCCTGCCAAGAAGGATAGTAGTTCTAGCGAGAGTGAGTCAGATGAGGACTCTTCTGATAGTGAATCTGAGGATGAAAAGAAAAAAGCTAAAAGCACCAGTCAGACAAAAATGGATGTCGATGAAGAAGAGAGCTCCGATGACAGTGATGAGGAAGAAGACGAGAAACCTGCTAAAACTCCTCAGAAAGCCGGTAAGGATGTGGAGATGGTTGATGCTGACAAATCAGGAAAGAAAGCTCCTAAAACCCCTGCTACACCTAGTGCCGCAACAGGTGGATCAAAGACACTATTTGTTGGAAACCTGTCATTTAGCGTGCAGCGATCTGACATTGAGGAGTTTTTCAAAGAGTGTGGAGAAGTTGTTGATGTTCGTTTGGCAGTTGACGACACTGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGCTACCGCAGAGGCAGCACAAAGTGCCCTTGAATATAATGAGTATGAGTTATTGAATCGTCCTGTTAAGCTTGATTTAGCTCGTGAAAGGGGCGCATATACCCCTGGTGGCAGCAATTCCTTCCAGAAAAGTGGTCAGCAGCAAGCTGCTGGTCAAACTATATACGTAAGGGGCTTTGATAAATCTGTCGGATTTGATGAGATAAGATCGACCCTAAATGAGGCATTTGGTTCCTGTGGGGAGATCTCGAGGATGTCAATTCCAAAAGATTTTGAATCTGGAGAGCCTAAGGGGTTTGCTTACATTGACTTTGCTGATGCATCTAGCATGAAGAAAGCTCTAGAACTCAATGAGACTGAAGTTGGCGGTGGTTACCTCTCAGTTGAGGAAGCCAAACCTAGAGGGGATAGCTTTGGTTCAGGTGGAAGAGGTGGAGGTGGAAGGAGTGGCGGTCGATTCGGAGGTGGTAGGAGTAATGACGGTGGTCGATTCGGAGGAAGGAGCGGCGGTGGCCGATTTGGTGGTGGAAGGGGTGATAGAGGAGGCAGAGGTGGTCGAGGAAGAGGTGGTGGAAGGGGTTTCGGTAACAAACCAACCTTCGCTGCAGAAGGAAAAAAGACCACCTTCGCCGATGAGGACTAG | 1947 | 0.4638 | MGKTSKKSASKVETAPPVKKGKRQADEELEKQVSLKKQKVEEAAQKQKKEAKVQKKKEESSSDDSSSESEDEKPAPKVAVASKQPAKNGTLSAPAKKAKPASSSSSDDSSSESEDEPAAKVAKNGPPPAKKAKPASSSSSDDSSSESEDEKPAPKAAPAKNGAPTKSAKPASSSSSSESSDDDSDSDEVPKSKVVPAAAKNGSASAKKQSESSESEDSSSDEEDDKKKPVAKSAGVPTKKVESTESSDDDSSESSEEENNDDSDSSDSDDSSSEDDKKTAVKTVSNAKSAPAPKPAKKDSSSSESESDEDSSDSESEDEKKKAKSTSQTKMDVDEEESSDDSDEEEDEKPAKTPQKAGKDVEMVDADKSGKKAPKTPATPSAATGGSKTLFVGNLSFSVQRSDIEEFFKECGEVVDVRLAVDDTGRFRGFGHVEFATAEAAQSALEYNEYELLNRPVKLDLARERGAYTPGGSNSFQKSGQQQAAGQTIYVRGFDKSVGFDEIRSTLNEAFGSCGEISRMSIPKDFESGEPKGFAYIDFADASSMKKALELNETEVGGGYLSVEEAKPRGDSFGSGGRGGGGRSGGRFGGGRSNDGGRFGGRSGGGRFGGGRGDRGGRGGRGRGGGRGFGNKPTFAAEGKKTTFADED | 648 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc271963g00007 | 648 | CDD | RRM2_NUCLs | 488 | 566 | IPR034350 | - | |
Stsc271963g00007 | 648 | MobiDBLite | consensus disorder prediction | 348 | 372 | - | - | |
Stsc271963g00007 | 648 | SMART | rrm1_1 | 488 | 564 | IPR000504 | GO:0003723 | |
Stsc271963g00007 | 648 | SMART | rrm1_1 | 389 | 460 | IPR000504 | GO:0003723 | |
Stsc271963g00007 | 648 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 42 | 527 | - | - | |
Stsc271963g00007 | 648 | Gene3D | - | 477 | 599 | IPR012677 | - | |
Stsc271963g00007 | 648 | MobiDBLite | consensus disorder prediction | 563 | 648 | - | - | |
Stsc271963g00007 | 648 | MobiDBLite | consensus disorder prediction | 315 | 333 | - | - | |
Stsc271963g00007 | 648 | MobiDBLite | consensus disorder prediction | 210 | 232 | - | - | |
Stsc271963g00007 | 648 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 505 | 558 | IPR000504 | GO:0003723 | |
Stsc271963g00007 | 648 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 390 | 458 | IPR000504 | GO:0003723 | |
Stsc271963g00007 | 648 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 487 | 568 | IPR000504 | GO:0003723 | |
Stsc271963g00007 | 648 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 388 | 464 | IPR000504 | GO:0003723 | |
Stsc271963g00007 | 648 | MobiDBLite | consensus disorder prediction | 16 | 77 | - | - | |
Stsc271963g00007 | 648 | FunFam | Nucleolin 2 | 362 | 472 | - | - | |
Stsc271963g00007 | 648 | SUPERFAMILY | RNA-binding domain, RBD | 485 | 598 | IPR035979 | GO:0003676 | |
Stsc271963g00007 | 648 | Coils | Coil | 26 | 61 | - | - | |
Stsc271963g00007 | 648 | MobiDBLite | consensus disorder prediction | 248 | 270 | - | - | |
Stsc271963g00007 | 648 | Gene3D | - | 297 | 470 | IPR012677 | - | |
Stsc271963g00007 | 648 | SUPERFAMILY | RNA-binding domain, RBD | 379 | 479 | IPR035979 | GO:0003676 | |
Stsc271963g00007 | 648 | MobiDBLite | consensus disorder prediction | 1 | 387 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc271963g00007 | Stsc-Chr271963 | 52505 | 57769 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc271963g00007 | 373 | 559 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 29.744 | 4.29e-13 | 70.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc271963g00007 | K11294 | - | ahf:112789008 | 478.789 |