Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271963g00007 ATGGGCAAGACTAGCAAGAAATCAGCTTCCAAAGTTGAGACTGCTCCACCTGTCAAAAAGGGAAAGAGGCAGGCAGATGAGGAACTTGAGAAGCAAGTTAGTTTAAAGAAACAGAAGGTAGAAGAGGCTGCTCAGAAGCAAAAGAAGGAAGCGAAGGTGCAGAAGAAAAAGGAGGAAAGTAGTTCAGATGATTCTTCTTCAGAATCTGAAGATGAGAAACCTGCGCCTAAGGTTGCTGTTGCTTCAAAGCAGCCTGCTAAGAACGGCACTTTAAGTGCCCCTGCAAAGAAAGCCAAGCCAGCTAGTAGTTCTAGCTCTGATGATTCTTCTTCAGAGTCTGAAGATGAGCCTGCAGCTAAGGTTGCAAAGAATGGGCCTCCTCCAGCAAAGAAAGCCAAGCCAGCAAGTAGTTCTAGCTCTGATGATTCTTCTTCAGAATCTGAAGATGAGAAACCTGCACCAAAGGCTGCTCCTGCAAAAAATGGGGCTCCAACAAAGTCAGCCAAGCCAGCTTCCTCTTCAAGTTCTTCGGAATCATCAGATGATGACTCTGACTCTGATGAAGTGCCCAAATCCAAGGTGGTGCCTGCTGCAGCTAAGAATGGATCTGCTTCTGCAAAGAAGCAAAGTGAAAGCTCTGAGTCTGAGGACAGCAGCTCTGATGAGGAAGATGATAAGAAAAAACCAGTAGCCAAATCAGCTGGTGTTCCAACTAAGAAAGTTGAATCCACTGAAAGTTCAGATGATGATTCAAGCGAAAGCTCTGAAGAAGAAAATAATGATGACAGTGACAGTTCAGATTCTGATGATAGCAGCTCAGAAGATGACAAGAAAACTGCTGTCAAGACTGTTTCCAATGCCAAATCAGCACCTGCACCAAAGCCTGCCAAGAAGGATAGTAGTTCTAGCGAGAGTGAGTCAGATGAGGACTCTTCTGATAGTGAATCTGAGGATGAAAAGAAAAAAGCTAAAAGCACCAGTCAGACAAAAATGGATGTCGATGAAGAAGAGAGCTCCGATGACAGTGATGAGGAAGAAGACGAGAAACCTGCTAAAACTCCTCAGAAAGCCGGTAAGGATGTGGAGATGGTTGATGCTGACAAATCAGGAAAGAAAGCTCCTAAAACCCCTGCTACACCTAGTGCCGCAACAGGTGGATCAAAGACACTATTTGTTGGAAACCTGTCATTTAGCGTGCAGCGATCTGACATTGAGGAGTTTTTCAAAGAGTGTGGAGAAGTTGTTGATGTTCGTTTGGCAGTTGACGACACTGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGCTACCGCAGAGGCAGCACAAAGTGCCCTTGAATATAATGAGTATGAGTTATTGAATCGTCCTGTTAAGCTTGATTTAGCTCGTGAAAGGGGCGCATATACCCCTGGTGGCAGCAATTCCTTCCAGAAAAGTGGTCAGCAGCAAGCTGCTGGTCAAACTATATACGTAAGGGGCTTTGATAAATCTGTCGGATTTGATGAGATAAGATCGACCCTAAATGAGGCATTTGGTTCCTGTGGGGAGATCTCGAGGATGTCAATTCCAAAAGATTTTGAATCTGGAGAGCCTAAGGGGTTTGCTTACATTGACTTTGCTGATGCATCTAGCATGAAGAAAGCTCTAGAACTCAATGAGACTGAAGTTGGCGGTGGTTACCTCTCAGTTGAGGAAGCCAAACCTAGAGGGGATAGCTTTGGTTCAGGTGGAAGAGGTGGAGGTGGAAGGAGTGGCGGTCGATTCGGAGGTGGTAGGAGTAATGACGGTGGTCGATTCGGAGGAAGGAGCGGCGGTGGCCGATTTGGTGGTGGAAGGGGTGATAGAGGAGGCAGAGGTGGTCGAGGAAGAGGTGGTGGAAGGGGTTTCGGTAACAAACCAACCTTCGCTGCAGAAGGAAAAAAGACCACCTTCGCCGATGAGGACTAG 1947 0.4638 MGKTSKKSASKVETAPPVKKGKRQADEELEKQVSLKKQKVEEAAQKQKKEAKVQKKKEESSSDDSSSESEDEKPAPKVAVASKQPAKNGTLSAPAKKAKPASSSSSDDSSSESEDEPAAKVAKNGPPPAKKAKPASSSSSDDSSSESEDEKPAPKAAPAKNGAPTKSAKPASSSSSSESSDDDSDSDEVPKSKVVPAAAKNGSASAKKQSESSESEDSSSDEEDDKKKPVAKSAGVPTKKVESTESSDDDSSESSEEENNDDSDSSDSDDSSSEDDKKTAVKTVSNAKSAPAPKPAKKDSSSSESESDEDSSDSESEDEKKKAKSTSQTKMDVDEEESSDDSDEEEDEKPAKTPQKAGKDVEMVDADKSGKKAPKTPATPSAATGGSKTLFVGNLSFSVQRSDIEEFFKECGEVVDVRLAVDDTGRFRGFGHVEFATAEAAQSALEYNEYELLNRPVKLDLARERGAYTPGGSNSFQKSGQQQAAGQTIYVRGFDKSVGFDEIRSTLNEAFGSCGEISRMSIPKDFESGEPKGFAYIDFADASSMKKALELNETEVGGGYLSVEEAKPRGDSFGSGGRGGGGRSGGRFGGGRSNDGGRFGGRSGGGRFGGGRGDRGGRGGRGRGGGRGFGNKPTFAAEGKKTTFADED 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271963g00007 648 CDD RRM2_NUCLs 488 566 IPR034350 -
Stsc271963g00007 648 MobiDBLite consensus disorder prediction 348 372 - -
Stsc271963g00007 648 SMART rrm1_1 488 564 IPR000504 GO:0003723
Stsc271963g00007 648 SMART rrm1_1 389 460 IPR000504 GO:0003723
Stsc271963g00007 648 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 42 527 - -
Stsc271963g00007 648 Gene3D - 477 599 IPR012677 -
Stsc271963g00007 648 MobiDBLite consensus disorder prediction 563 648 - -
Stsc271963g00007 648 MobiDBLite consensus disorder prediction 315 333 - -
Stsc271963g00007 648 MobiDBLite consensus disorder prediction 210 232 - -
Stsc271963g00007 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 505 558 IPR000504 GO:0003723
Stsc271963g00007 648 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 390 458 IPR000504 GO:0003723
Stsc271963g00007 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 487 568 IPR000504 GO:0003723
Stsc271963g00007 648 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 388 464 IPR000504 GO:0003723
Stsc271963g00007 648 MobiDBLite consensus disorder prediction 16 77 - -
Stsc271963g00007 648 FunFam Nucleolin 2 362 472 - -
Stsc271963g00007 648 SUPERFAMILY RNA-binding domain, RBD 485 598 IPR035979 GO:0003676
Stsc271963g00007 648 Coils Coil 26 61 - -
Stsc271963g00007 648 MobiDBLite consensus disorder prediction 248 270 - -
Stsc271963g00007 648 Gene3D - 297 470 IPR012677 -
Stsc271963g00007 648 SUPERFAMILY RNA-binding domain, RBD 379 479 IPR035979 GO:0003676
Stsc271963g00007 648 MobiDBLite consensus disorder prediction 1 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271963g00007 Stsc-Chr271963 52505 57769 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271963g00007 373 559 Eukaryotic Initiation Factors Gene Family AT4G34110 29.744 4.29e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271963g00007 K11294 - ahf:112789008 478.789