Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271963g00006 ATGGCAAGCCCTTCGAGTCCTGATTGGCTGAACAAAGCCGACAATGCATGGCAACTCGTGTCGGCGACACTCGTCGGCCTTCAAAGTGTTCCTGGACTCATAATCTTGTATGGAGGAGCAGTGAAGAAAAAATGGGCAGTGAACTCAGCATTCATGTCGTTATATGCATTTGCATGTGTTTTCTTCTGTTGGATTGCATGGGGTTATAGAATGTCCTTTGGTGATAAGCTTTTACCATTTTGGGGTAAAGCTGCGGTTGCACTTGATGAGAAGTACCTTCTTGAGCCTGCATTTTCTGGGATGTTCCCAAATGCAACAATGGTGTATTTCCAGTGTGTGTTTGCAGCTATAACTCTGATTTTGATAGCAGGTGCTTTGTTGGGAAGAATGAACTTCTATGCATGGATGCTGTTTGTGCCTCTTTGGCTCACTTTCTCATACACCTTCACTGCATTCAGTATATGGAGTCCAAATGGATTCTTGTTCAAGCTTGGAATAATTGATTACTCTGGTGGATATGTTATTCATTTGTCTTCTGGTGTTGCTGGATTCACTGCTGCTTATTGGGTTGGGCCTCGGCTTAACAAGGACAGAGAAAGGTTCCCTCCAAACAACATCCTACTGATGTTGGCTGGGGCTGGCTTACTGTGGATGGGGTGGACCGGCTTCAATGGCGGCGACCCCTACTCAGTAGGCATAGATTCCTCCCTGGCTGTTTTGAACACTCATGCGTGCACTGCCACCAGCTTGCTCACTTGGGTCATTCTTGATGTCATCTTCTTCCGCAAACCATCTGTTATTGGTGCTGTTCAAGGCATGATCACCGGCTTGGTCTGCATTACCCCTGCTGCAGGAGTTGTGCAAGGATGGGCAGCAATTCTAATGGGGATTCTATCCGGTTCAATTCCATGGTTCACAATGATGGTAGTTCACAAGAGATCAAAGCTTCTCCAAAAAGTGGATGACACAATGGCAGTGTTGCACACTCATGCCATCGCAGGAACCCTTGGAGGAGTTCTCTCAGGCCTATTTGCTGTGCCAAAGCTCAACTTCTTATTCTATGGTAGTTACAACAAATATGTTGGACTCTTCTATGGCCTCCAAATGGGAATAGGCAGAACAGGGTTTAGACAAATACTGGTCCAGTTGCTTGGGATATTTTTTGTGGNNNNNNNNNNTCTCAGGCCTATTTGCTGTGCCAAAGCTCAACTTCTTATTCTATGGTAG 1227 0.4548 MASPSSPDWLNKADNAWQLVSATLVGLQSVPGLIILYGGAVKKKWAVNSAFMSLYAFACVFFCWIAWGYRMSFGDKLLPFWGKAAVALDEKYLLEPAFSGMFPNATMVYFQCVFAAITLILIAGALLGRMNFYAWMLFVPLWLTFSYTFTAFSIWSPNGFLFKLGIIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYSVGIDSSLAVLNTHACTATSLLTWVILDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAILMGILSGSIPWFTMMVVHKRSKLLQKVDDTMAVLHTHAIAGTLGGVLSGLFAVPKLNFLFYGSYNKYVGLFYGLQMGIGRTGFRQILVQLLGIFFVXXXXLRPICCAKAQLLILW 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271963g00006 408 SUPERFAMILY Ammonium transporter 9 390 - -
Stsc271963g00006 408 Pfam Ammonium Transporter Family 16 387 IPR024041 GO:0008519|GO:0016020|GO:0072488
Stsc271963g00006 408 PRINTS Rhesus blood group protein signature 207 225 IPR002229 GO:0005886
Stsc271963g00006 408 PRINTS Rhesus blood group protein signature 111 127 IPR002229 GO:0005886
Stsc271963g00006 408 PRINTS Rhesus blood group protein signature 238 260 IPR002229 GO:0005886
Stsc271963g00006 408 PRINTS Rhesus blood group protein signature 331 347 IPR002229 GO:0005886
Stsc271963g00006 408 ProSitePatterns Ammonium transporters signature. 168 193 IPR018047 GO:0008519|GO:0016020|GO:0072488
Stsc271963g00006 408 Gene3D Ammonium transporter AmtB like domains 2 394 IPR029020 -
Stsc271963g00006 408 PANTHER AMMONIUM TRANSPORTER MEP2 2 390 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271963g00006 Stsc-Chr271963 49252 51415 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271963g00006 105 389 Inorganic Solute Cotransporters AT2G38290 64.561 3.26e-117 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271963g00006 K03320 - gmx:100787856 670.618