Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271963g00005 ATGTACTTGAGGAGAATACAGTGTATGGATCGGAGATGGGCTTTAGTATTCCAACCATCAAAATACTTTTCTAGGCCAAGATTCTCAGATCATGCAAATTTGCCATCTTTTTCCTCTAAGACCACTGTGAGAGAATACGCTCATAGTAGTTTCATCAGAAGACATATTTTAGGTTCAGATTCATATAGCTTTGCGTCATATAGAAATAGTTGTACTTGTCTGGACAAAAGAACTAGTTTATGTACAAGTATTCAGTTAAGTTCATATAGTTCTGAAAGTGACGGGAGAAATGCAAGTGAGGATAAACATGTGCATGTTAAAGATGGAGCTAACATTGATAAAGGGAAGAATCAGAAAGAGAAGTTCGGTAAAGATGTCAAGTATTGCAATGTGCATGAGCGACTTGGCGAGCAGGATCAAGAGGAATGGCTTAATAATGAGAAACTTGCCATAGAAAGTAAAAAGAAAGAATCACCATTTTTGACAAGAAGGGATAAGTTCAGAAACGAGTTTCTAAGAAGAATTGTTCCCTGGGAGAAAATAAACATTTCATGGGACACATTTCCATATCACGTCAATGAGCACACCAAGAATCTGCTGGTGGAATGTACTGCGTCACATTTGAGACATAATTCATTCGCTTCATCTTTTGGTTTTCGGCTCACATCTTCTAGTGGGAGGATATTGCTTCAGAGTGATCCTGGCACTGAACTCTATCGTGAGAGGCTAGTTAAAGCTCTTGCACATGATTTACAAGTTCCATTGTTAGTTCTTGATAGTAGCATCCTTGCTCCTTATGATGTTGATGATGAATTATCATCAGAGTATGAGTCTGAAGATGATAATGCAGACTCCGGGGCAGAGGGTTCTCTGGAGTCAGATAACGAGGATGATAATGATGCTGGAAATGAAGAAGAGTGGACTAGCAGTAATGAGGTGAAGTCAGATGCAAGTGATAATGAAAATGATAATGAAGATGCAATAGCATCTGCTGAAGCTGCTCTTAAGAAGGTTAAGGCAGCTGTTCAGAAACTTGTTCCTTACAACATTGACGAAATCGAAAAGATAACATCTGGAGAATCTGAGAGTTCTGAGTCATCTAGATCTAATGAAGCCAATTCTTCTGATAAATCCGGGTGCCAGCTAAGAAAAGGTGACCGAGTGAAGTACATTGGACCAACTAATCGAGCTACTATTGATGATAGGCCTTTAATCAATGGCCAGAGAGGAGAGGTATATGAAGTGAGCGGAGATCAAGTTGCTGTCATAATGGATATTAATGAAGATCGTGGCAATGAGGGTGGGGCAGATAATCTTAGTAGTGACGATCATACAAAACCACCGATTCGTTGGATACATGTTAAGGACATTCAGAATGATCTTGATGCTCAAGCACTAGATTGCTATATTGCATTGGAGGCTTTATGTGAGGTCTTGCAATCGAAACAACCTCTCATTGTCTATTTTCCAGACGGTTCACAGTGGTTGCATAAATCAACAATGATACTACCAAACTTTGGGCGACTTGCTAAGCTGCCTCTTTCTCTAAAAAGTTTGACTGGGGGACTTAGAGGTGCAAAGAGATCAGAAGATGATGAAATTCACAAGCTCTTTTCTAATGTTTTGTGTGTACACCCGCCTAAGGATGAGAATTTGCTGGTAACCTTTAAGAAACAACTTGAAGAAGACAGGAAAATTGTTGTTTCAAGAAGTAATTTGAGTGAGTTAAGGAAGGTTCTTGAAGAACATCAGCTTTCATGTGTGGATCTATTGTACGTAAACACCAATGGTGTTATTTTGACAAAACAAAAAGCTGAAAAGGTTATTGGTTGGGCGAAAAACCATTACTTGTCATCATGCCTGCTCCCTTCTGTGAAAGGAGAACGCTTGTGCATCCCTCGTGAAAGTCTTGAAATTGCAATCTCAAGATTAAAGGGTCAGGAAAATATATCACAAAAGCCATCTCAAAACCTTAAGAACCTTGCAAAGGATGAATTTGAGAGCAATTTCGTTTCGTCTGTCGTAGCTCCGGGTGAAATTGGGGTGAAGTTTGATGATATAGGTGCTCTTGAAAATGTGAAAAAGGCACTTAATGAACTTGTTATTCTTCCGATGAGAAGACCTGAACTTTTTTCTCGTGGTAACTTATTGCGGCCTTGTAAAGGAATATTACTTTTTGGTCCTCCTGGAACTGGGAAAACACTTCTGGCCAAAGCACTTGCAACTGAAGCTGGTGCAAATTTTATTAGCATAACTGGTTCAACTCTTACTTCAAAGTGGTTTGGAGATGCAGAAAAACTAACAAAAGCCCTCTTCTCCTTTGCCAGCAAACTTTCTCCCGTCATTATATTTGTTGATGAAGTTGACAGTTTGCTTGGTGCTCGAGGTGGTGCTTTTGAGCATGAAGCCACTAGAAGGATGAGGAATGAGTTCATGGCAGCTTGGGATGGATTGAGATCAAAAGAAAATCAAAGAATCCTCATTCTTGGTGCAACGAATCGGCCATTTGACCTTGACGATGCTGTTATTCGACGCTTACCAAGAAGGATATATGTTGATTTACCTGATGCCGAAAATCGAATGAAGATTCTGAGAATATTTCTTGCACAAGAGAATTTGGACCCTAATTTTGAGTATGACAAACTTGCTAACTTGACTGAAGGATACTCTGGAAGTGATTTGAAGAACCTTTGTGTTGCTGCGGCTTATAGACCTGTTCAAGAGCTTATAGAGCAAGAAAACAGGGTACAGGGAGGGGCTAATAGTACAACTACAGTATTAAGGCCTCTTAATTTGGATGATTTTATTCAGTCAAAATCCACGGTGGGTCCATCTGTGGCATACGATGCAACAAGTATGAATGAGTTGAGGAAGTGGAATGAAATGTATGGTGAAGGTGGTAGTAGGACTAAAGCATCATTCGGATTTTGA 2931 0.3971 MYLRRIQCMDRRWALVFQPSKYFSRPRFSDHANLPSFSSKTTVREYAHSSFIRRHILGSDSYSFASYRNSCTCLDKRTSLCTSIQLSSYSSESDGRNASEDKHVHVKDGANIDKGKNQKEKFGKDVKYCNVHERLGEQDQEEWLNNEKLAIESKKKESPFLTRRDKFRNEFLRRIVPWEKINISWDTFPYHVNEHTKNLLVECTASHLRHNSFASSFGFRLTSSSGRILLQSDPGTELYRERLVKALAHDLQVPLLVLDSSILAPYDVDDELSSEYESEDDNADSGAEGSLESDNEDDNDAGNEEEWTSSNEVKSDASDNENDNEDAIASAEAALKKVKAAVQKLVPYNIDEIEKITSGESESSESSRSNEANSSDKSGCQLRKGDRVKYIGPTNRATIDDRPLINGQRGEVYEVSGDQVAVIMDINEDRGNEGGADNLSSDDHTKPPIRWIHVKDIQNDLDAQALDCYIALEALCEVLQSKQPLIVYFPDGSQWLHKSTMILPNFGRLAKLPLSLKSLTGGLRGAKRSEDDEIHKLFSNVLCVHPPKDENLLVTFKKQLEEDRKIVVSRSNLSELRKVLEEHQLSCVDLLYVNTNGVILTKQKAEKVIGWAKNHYLSSCLLPSVKGERLCIPRESLEIAISRLKGQENISQKPSQNLKNLAKDEFESNFVSSVVAPGEIGVKFDDIGALENVKKALNELVILPMRRPELFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLSPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAQENLDPNFEYDKLANLTEGYSGSDLKNLCVAAAYRPVQELIEQENRVQGGANSTTTVLRPLNLDDFIQSKSTVGPSVAYDATSMNELRKWNEMYGEGGSRTKASFGF 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271963g00005 976 MobiDBLite consensus disorder prediction 307 321 - -
Stsc271963g00005 976 Gene3D - 855 940 - -
Stsc271963g00005 976 MobiDBLite consensus disorder prediction 271 305 - -
Stsc271963g00005 976 Pfam AAA+ lid domain 877 912 IPR041569 -
Stsc271963g00005 976 Gene3D - 681 949 IPR027417 -
Stsc271963g00005 976 MobiDBLite consensus disorder prediction 357 386 - -
Stsc271963g00005 976 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 682 904 IPR027417 -
Stsc271963g00005 976 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 681 857 - -
Stsc271963g00005 976 MobiDBLite consensus disorder prediction 362 379 - -
Stsc271963g00005 976 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 166 971 - -
Stsc271963g00005 976 ProSitePatterns AAA-protein family signature. 826 845 IPR003960 GO:0005524|GO:0016887
Stsc271963g00005 976 MobiDBLite consensus disorder prediction 271 324 - -
Stsc271963g00005 976 SMART AAA_5 719 856 IPR003593 GO:0016887
Stsc271963g00005 976 Pfam ATPase family associated with various cellular activities (AAA) 723 853 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271963g00005 Stsc-Chr271963 36586 48120 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271963g00005 682 913 Calmodulin-binding Proteins AT3G56690 37.447 1.63e-39 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271963g00005 - - gmx:100812718 1488.01