Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271963g00004 ATGGATGCTTTGATTTTTCAGCAAGAGATTGATTTGTTGAAGAATTTGAACCACAAAAACATTGTAAAGTATCTTGGGTCCTTAAAGACGAAGAGTCACCTGCACATAATTCTTGAGTATGTGGAGAATGGTTCACTTGCAAATATTATCAAGCCAAATAAATTTGGCCCTTTTCCAGAATCACTGGTTGCTGTTTATATAGCCCAGGTGTTGGAAGGATTGGTTTATCTACATGAACAAGGTGTTATTCATCGAGATATCAAGGGTGCAAACATATTGACAACTAAAGAGGGTCTTGTCAAACTTGCTGATTTTGGTGTTGCGACAAAATTAACAGAGGCTGATGTCAATACACATTCTGTTGTTGGAACACCATACTGGATGGCCCCAGAGGTTATAGAAATGTCTGGGGTTTGTGCTGCTTCTGACATTTGGAGTGTCGGCTGTACAGTTATTGAACTTCTTACATGTGTACCTCCGTATTATGATTTGCAGCCTATGCCGGCTCTTTTTCGTATTGTCCAGGATGAGCATCCTCCAATTCCTGATAGCTTGTCACCTGACATTACTGATTTTCTGCATCAATGCTTTAAGAAGGATGCTAGACAAAGGCCTGATGCTAAAACACTGCTGTCTCACCCTTGGATTCAAAACTGTAGACGTGCCCTCCAGTCTTCACTTCGTCATAGTGGAACATTGAGAAATATAGAGGAAGATGATTCTGCAGGTGCACAAGTTTCTGCTGGTGATCACAAGGGTGCCGCTGAAAGATCTTCAGCGGAGAAAAAGGATCCTGCAAAAGTGTCTGCTGATGGCAGAAAATCTCACGAAGACAATGCTTCAGATTCTAGTTTGCTCAATGAGAGAATGGAGAAGGCTGATGATGTTCCATCAGATCAAGTTCTTACCTTAGCCATTCCTGAGACGTCATTTCTACAAACTGGTTCTTACAAACTCTCTTCTAATGGAGAAGATGGTTCTGGATCAACTGATGATCATGGAATGTCTAATGCTAAAGACCAACATGCAGTTGGGGTGAATGGAGAAGTCAAATCTCCAAAGTCAAGAGGGATGGCTAACAAGGTTGGAGGAAAAGACAGCACCAATAATGCCAATAAATCTTTTGCTTTTGGAACAAGAGGTCATGATAATGGTTCCCTGGTGGCAATGAAGGTACCAGCCCAAGGGGAAGGAAATGAGCTGAGTAGATTTAGTGACCCTCCAGGTGATGCATACTTAGATGATTTATTTCAAGACAAACAACCTGGCGATGCAGCTGCTCAGGCTTCCACATCTACATCCACTTCACATATGGCTAAAGGCAGTCCATCCGTTAATGATGGTGGGAAAAATGATCTGGCCAAGGAGTTGAGGGCCACCATTGCCCGAAAGCAATGGGAGAAGGAGAGTGAAATTGGACAGGCAAACAATGGTGGGAACCTTTTACACCGAGTAATGATAGGTGTTCTAAAAGATGATGTGATTGACATTGATGGTCTGGTCTTCGACGAAAAGCTTCCTGGAGAGAATCTTTTTCCTTTGCAGGCCGTTGAGTTTGGCAGATTAGTTGGTTCACTCCGACAAGAGGAATCAGAAGAAGTCATTGCCTCTGCTTGCCAGAAACTTATTGGTATATTTCACCAACGTCCAGAGCAGAAGATTGTTTTTGTTACCCAGCATGGTTTACTTCCTCTGGCAGACTTACTAGAGGTTCCCAAAACACGTGTCATATGCTCTGTGCTTCAACTTATAAATCAAATAATTAAAGACAACACTGATTTTCAAGAAAATGCATGTCTTGTTGGATTGATTCCTGCAGTCATGAGCTTTGCAGTACCTGATCGACCCCGAGAGATTCGTATGGAAGCGGCTTATTTTTTGCAGCAGCTTTGTCAGTCTAGCTCTTTGACATTACAAATGTTTATAGCTTGTCGTGGTATTCCTGTACTGGTTGGATTTCTTGAGGCGGATTATGCCAAGTACAGGGAAATGGTTCATCTGGCTATTGATGGCATGTGGCAGGTATTTAAGCTTCAACAGTCAACTCTTAGAAATGACTTTTGTCGAATTGCTGCAAAGAATGGAATACTCCTTAGGCTTATCAATACCCTTTATAGCTTAAATGAAGCAACTCGGCTAGCTTCTATGTCCGTTGGGGGTGGACTTTTGGTTGATGGTTCATCTCAACGACCGCGTTCAGGAATAGCAGATTCTACACATCCTTTTATTGGTCAGAACGAGGCATTGCTCTCTTCAGTAGATCAGCAGGATATAGCTAAAGTTAGGCGTGGAGTACTTGATCATCACGTAGAAGCTTCCCATGCTTCAACATCCAATAATCGAAGATCAGATTCTACTTACTCCTTGGATGTTGATAGGCCTCAATCTAGCAATGCAGCATCTGAACCAAGGGATTCTTTTTCTCGAGCAGATGGTGAATCCAGACAGCAGCGGATCAGTTTCTCTGCTAACAGGACATCAACAGATAGACCTCCCAAAGTATCGGAGACCGCATCAAATGGGTTATCCGTAACTGGAGGAACACAGCAAGAGCAAGTTCGGCCTCTTCTAAGCTTGTTGGAGAAAGAGCCCCCATCTGGACGCTTCTCTGGCCAGCTTGAGTATGTGCGTCAGTTTTCTGGATTAGAAAGACATGAAAGTGTACTTCCTTTGCTACATGCCTCTGAAAAGAAAACAAATGGTGAACTAGACCTTTTGATGGCAGAATTTGCAGATGTATCTCAACGTGGAAAAGAAAATGGAAATCTTGATTCTGGTACCAGGGTGTCTCACAAAGTTGCTCCCAAGAAATTAGGGACTTCAGGTGCTAGTGAAGGAGCTGCTTCTACATCTGGGATCGTATCTCAAACTGCATCAGGTGTACTATCTGGTTCAGGTGTCCTAAATGCTAGACCAGGAAGTGCAACTTCATCTGGGCTTCTTTCCCACATGGTTTCATCATTGAATGCAGATGTTGCTAGGGAGTACCTAGAAAAGGTGGCAGATCTTCTGCTTGAGTTTGCACAAGCAGACACAACAGTGAAATCTTATATGTGCAGCCATAGCTTGCTCAGTCGTCTTTTCCAGATGTTTAACAGGGTGGAGCCTCCTATTCTGTTAAAGATACTGAAGTGTATTAATCATCTGTCAACGGATCCAAATTGCTTAGAAAATCTTCAACGTGCTGAAGCTATAAAATACTTGATACCAAATCTTGAACTCAAAGAAGGATCTCTTGTATCAGAGATACATCACGAGGTCCTCAACGCACTGTTCAACTTATGCAAGATAAATAAAAGGAGACAAGAGCAGGCAGCTGAAAATGGGATCATTCCCCATTTGATGCAATTCATCACATCAAATTCTCCCTTGAAACAATATGCATTGCCTCTGCTATGTGATATGGCTCATGCATCTCGCAATTCAAGGGAGCAGTTAAGGGCTCATGGTGGTTTGGATGTCTATTTGAATCTCCTTGAGGATGAAATTTGGTCTGTGACTGCACTAGATTCTATTGCTGTTTGCTTAGCCCATGACAATGATAGTAAGAAGGTGGAACAAGCATTACTTAAAAAGGATGCAGTTCAAAAGCTTGTGAAGTTCTTCCAGTCCTGTCCAGAGCAGCATTTTGTACACATATTAGAGCCATTCTTGAAAATCATCACAAAATCTGCAAGGATCAATACCACACTGGCTGTTAATGGATTAACACCATTGCTCGTTGCAAGGCTTGATCATCAGGATGCCATTGCTCGTCTTAATTTACTCAGGCTAATAAAGGCTGTGTATGAGCACCATCCGCAGCCGAAGAAGTTGATTGTGGAGAATGATTTGCCTCAGAAACTTCAAAACTTAATAGGTGAACGCAGAGATGGCCAAGTTTTGGTTAAACAGATGGCTACTTCATTGCTTAAAGCTCTACACATAAACACCGTTTTGTAA 3942 0.4234 MDALIFQQEIDLLKNLNHKNIVKYLGSLKTKSHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDEHPPIPDSLSPDITDFLHQCFKKDARQRPDAKTLLSHPWIQNCRRALQSSLRHSGTLRNIEEDDSAGAQVSAGDHKGAAERSSAEKKDPAKVSADGRKSHEDNASDSSLLNERMEKADDVPSDQVLTLAIPETSFLQTGSYKLSSNGEDGSGSTDDHGMSNAKDQHAVGVNGEVKSPKSRGMANKVGGKDSTNNANKSFAFGTRGHDNGSLVAMKVPAQGEGNELSRFSDPPGDAYLDDLFQDKQPGDAAAQASTSTSTSHMAKGSPSVNDGGKNDLAKELRATIARKQWEKESEIGQANNGGNLLHRVMIGVLKDDVIDIDGLVFDEKLPGENLFPLQAVEFGRLVGSLRQEESEEVIASACQKLIGIFHQRPEQKIVFVTQHGLLPLADLLEVPKTRVICSVLQLINQIIKDNTDFQENACLVGLIPAVMSFAVPDRPREIRMEAAYFLQQLCQSSSLTLQMFIACRGIPVLVGFLEADYAKYREMVHLAIDGMWQVFKLQQSTLRNDFCRIAAKNGILLRLINTLYSLNEATRLASMSVGGGLLVDGSSQRPRSGIADSTHPFIGQNEALLSSVDQQDIAKVRRGVLDHHVEASHASTSNNRRSDSTYSLDVDRPQSSNAASEPRDSFSRADGESRQQRISFSANRTSTDRPPKVSETASNGLSVTGGTQQEQVRPLLSLLEKEPPSGRFSGQLEYVRQFSGLERHESVLPLLHASEKKTNGELDLLMAEFADVSQRGKENGNLDSGTRVSHKVAPKKLGTSGASEGAASTSGIVSQTASGVLSGSGVLNARPGSATSSGLLSHMVSSLNADVAREYLEKVADLLLEFAQADTTVKSYMCSHSLLSRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRAEAIKYLIPNLELKEGSLVSEIHHEVLNALFNLCKINKRRQEQAAENGIIPHLMQFITSNSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLNLLEDEIWSVTALDSIAVCLAHDNDSKKVEQALLKKDAVQKLVKFFQSCPEQHFVHILEPFLKIITKSARINTTLAVNGLTPLLVARLDHQDAIARLNLLRLIKAVYEHHPQPKKLIVENDLPQKLQNLIGERRDGQVLVKQMATSLLKALHINTVL 1313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271963g00004 1313 MobiDBLite consensus disorder prediction 315 334 - -
Stsc271963g00004 1313 FunFam MAP3K epsilon protein kinase 1 511 719 - -
Stsc271963g00004 1313 Gene3D Transferase(Phosphotransferase) domain 1 1 251 - -
Stsc271963g00004 1313 MobiDBLite consensus disorder prediction 254 288 - -
Stsc271963g00004 1313 SUPERFAMILY ARM repeat 1183 1295 IPR016024 -
Stsc271963g00004 1313 SMART arm_5 549 589 IPR000225 GO:0005515
Stsc271963g00004 1313 SMART arm_5 1098 1137 IPR000225 GO:0005515
Stsc271963g00004 1313 SMART arm_5 1052 1096 IPR000225 GO:0005515
Stsc271963g00004 1313 MobiDBLite consensus disorder prediction 813 851 - -
Stsc271963g00004 1313 MobiDBLite consensus disorder prediction 362 379 - -
Stsc271963g00004 1313 SUPERFAMILY Protein kinase-like (PK-like) 5 217 IPR011009 -
Stsc271963g00004 1313 ProSiteProfiles Protein kinase domain profile. 1 216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271963g00004 1313 SUPERFAMILY ARM repeat 522 1205 IPR016024 -
Stsc271963g00004 1313 Gene3D - 1169 1311 IPR011989 -
Stsc271963g00004 1313 MobiDBLite consensus disorder prediction 769 851 - -
Stsc271963g00004 1313 MobiDBLite consensus disorder prediction 772 804 - -
Stsc271963g00004 1313 SMART serkin_6 1 216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271963g00004 1313 MobiDBLite consensus disorder prediction 917 948 - -
Stsc271963g00004 1313 MobiDBLite consensus disorder prediction 315 382 - -
Stsc271963g00004 1313 CDD STKc_Cdc7_like 7 216 - -
Stsc271963g00004 1313 PRINTS Tyrosine kinase catalytic domain signature 76 94 IPR001245 GO:0004672|GO:0006468
Stsc271963g00004 1313 PRINTS Tyrosine kinase catalytic domain signature 142 164 IPR001245 GO:0004672|GO:0006468
Stsc271963g00004 1313 PRINTS Tyrosine kinase catalytic domain signature 185 207 IPR001245 GO:0004672|GO:0006468
Stsc271963g00004 1313 PRINTS Tyrosine kinase catalytic domain signature 38 51 IPR001245 GO:0004672|GO:0006468
Stsc271963g00004 1313 Gene3D - 971 1168 IPR011989 -
Stsc271963g00004 1313 FunFam MAP3K epsilon protein kinase 1 2 248 - -
Stsc271963g00004 1313 MobiDBLite consensus disorder prediction 237 288 - -
Stsc271963g00004 1313 Pfam Protein kinase domain 6 216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271963g00004 1313 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 6 663 - -
Stsc271963g00004 1313 FunFam MAP3K epsilon protein kinase 1-like 967 1308 - -
Stsc271963g00004 1313 Gene3D - 514 732 IPR011989 -
Stsc271963g00004 1313 MobiDBLite consensus disorder prediction 422 452 - -
Stsc271963g00004 1313 MobiDBLite consensus disorder prediction 424 442 - -
Stsc271963g00004 1313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 82 94 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271963g00004 Stsc-Chr271963 23834 35788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271963g00004 8 1313 MAP Kinase Kinase Kinase AT3G13530 72.598 0.0 1861
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE-Pl Stsc271963g00004 Pkinase 1.4e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271963g00004 - - gmx:100813256 2201.79