Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271962g00018 ATGGAAGACCAGCCACCAACAAAGCCATCACCAACAACCAAGACTTACAAGCTCACTGCCACTTCAATCTCCTACACCAAATCCACCACCACCACCACCACCACTACAACCTTGGCTGTACCACGCTTACTCTTCAAACACTGCACAACAACCCCACCAGCCTACATCCTCAAAGACGTCTCCTTAACTGCATACCCTTCTGAAATCCTTGCCATTGTTGGCCCAAGTGGTGCAGGAAAATCCACCCTCTTAGACATTCTCTCTGCTAGAACACTTCCATCACATGGAACTCTTGAACTCAACAATTCCCCACTCATTCCTTCCACATTCAGAAAAATCTCAGCATATGTTCCACAACATGATGCATGCCTCCCTTTGCTCACAGTGTCTGAGACTTTTGCATTTTCAGCACATCTCCTCAAGCCTAAAACCTCTGACATTGCAGCCATAGTTTCTTCTCTTCTCAGTGAGCTGAGGTTAACTCATTTGGCCAACACAAGGCTCTCTCATGGTCTATCAGGTGGAGAACATAGGAGAATCTCCATAGGCCTTAGTCTTCTCCATGATCCTGCAGTTTTGCTCCTTGATGAACCAACTTCAGGCCTTGACAGCACCTCTGCATTCAAAGTCATGCAGATTCTGAAATCCATTTGTGTTTCACGTCACAGGACAATTGTTCTCTCCATTCACCAACCAAGCTTCAAGATCCTCTCTTGCATTAATAGGATATTGTTGCTGTCAAAGGGTACTGTGGTCCACCATGGAAGCCTTGCATCACTCCAAGCATTCTTACACTCAAATGGCTTTACTGTGCCCCATCAACTCAATGCATTGGAATATGCAATGGAGATATTAAGTCAACTGAATGAGCTTAGGCCTATTACTCCACCAAGCATTCCTGAATCACCTGAAAGTTCATCAGCTGCAAGTTCCATATCTGATAACAATGGACATAAATCCAAAGAGATAATAAGGTACAAGAGCTCCAGAATCCATGAAATATGCACTCTATATGGAAGATTTTGGAAGATAATTTACAGAACAAGGCAACNNNNNNNNNNCTTAGAGGCACTTGTTGTGGGGCTTGTTTTGGGAACAATTTACATCAACATAGGGTTTGACAAAGAAGGAATTGAGAAAAGGTTTGGTTTATTTGCATTCACCTTAACATTCCTACTATCTTCCACAACAGAAACCCTTCCAATATTCATCAATGAGAGGCCAATCTTGCTTAGAGAAACCTCAAGCGGTGTTTATAGGCTGTCATCATATCTGATTGCAAACACACTTGTTTTCTTGCCATACTTGCTGGTAGTTGCAATCATATACTCCATACCAGTATACTTGCTAGTTGGTTTATGTGCTTCTTGGATTTCTTTTGCGTATTTTGTTTTGGTGATTTGGGTAATTGTTCTCATGGCAAACTCCTTTGTACTTTTCTTGAGTTCCCTGGCACCTAACTACATTGCTGGCACTTCACTATTAACAGTGCTTCTTGCAGCATTTTTTCTCTTCTCTGGCTACTTCATCTCAAAGGAGAGTCTACCAAAGTACTGGCTTTTCATGCATTTTCTCTCCATGTACAAGTATGCACTTGATGCATTACTCATCAATGAGTACTCTTGTTTGCTCACAAGGTGTCTGATATGGTTCCAAGAGAATCAAGTTTGTATGGTTACTGGGGCTGATGTCTTGCAGAAGAGGGGACTCCAACAAACTCAACGTTGGACCAATGTTTACTTCTTGATCGCCTTCTTTGTTTTTTACCGTGTGCTTTGCTTCTTCGTTTTGATTAGAAGGGTTTCAAGCTCCAAAACTTGA 1821 0.4201 MEDQPPTKPSPTTKTYKLTATSISYTKSTTTTTTTTTLAVPRLLFKHCTTTPPAYILKDVSLTAYPSEILAIVGPSGAGKSTLLDILSARTLPSHGTLELNNSPLIPSTFRKISAYVPQHDACLPLLTVSETFAFSAHLLKPKTSDIAAIVSSLLSELRLTHLANTRLSHGLSGGEHRRISIGLSLLHDPAVLLLDEPTSGLDSTSAFKVMQILKSICVSRHRTIVLSIHQPSFKILSCINRILLLSKGTVVHHGSLASLQAFLHSNGFTVPHQLNALEYAMEILSQLNELRPITPPSIPESPESSSAASSISDNNGHKSKEIIRYKSSRIHEICTLYGRFWKIIYRTRQXXXXLEALVVGLVLGTIYINIGFDKEGIEKRFGLFAFTLTFLLSSTTETLPIFINERPILLRETSSGVYRLSSYLIANTLVFLPYLLVVAIIYSIPVYLLVGLCASWISFAYFVLVIWVIVLMANSFVLFLSSLAPNYIAGTSLLTVLLAAFFLFSGYFISKESLPKYWLFMHFLSMYKYALDALLINEYSCLLTRCLIWFQENQVCMVTGADVLQKRGLQQTQRWTNVYFLIAFFVFYRVLCFFVLIRRVSSSKT 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271962g00018 606 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 15 591 - -
Stsc271962g00018 606 Pfam ABC transporter 57 200 IPR003439 GO:0005524
Stsc271962g00018 606 MobiDBLite consensus disorder prediction 301 316 - -
Stsc271962g00018 606 SMART AAA_5 66 250 IPR003593 GO:0016887
Stsc271962g00018 606 Pfam ABC-2 type transporter 333 540 IPR013525 GO:0016020|GO:0140359
Stsc271962g00018 606 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 38 273 IPR003439 GO:0005524
Stsc271962g00018 606 Gene3D - 44 290 IPR027417 -
Stsc271962g00018 606 MobiDBLite consensus disorder prediction 295 316 - -
Stsc271962g00018 606 Pfam ABC-2 type transporter 230 288 IPR043926 GO:0140359
Stsc271962g00018 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 260 IPR027417 -
Stsc271962g00018 606 FunFam ATP-binding cassette transporter 46 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271962g00018 Stsc-Chr271962 109185 111411 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271962g00018 50 256 Calmodulin-binding Proteins AT2G36910 30.556 2.26e-17 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271962g00018 K05681 - gmx:100790712 885.56