Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271962g00013 ATGGAGCGAATGTCTGGTTTATTTAGTTCTTTTTCGCTCATCCCGTCAGCAAGTGAAGCTAGAGGTACTCATCGTCGACAACGTAGTAGTGGACTCGAAAATAGACAAAGTAGTGCTGCAAATGGAAATGAAAATTTTAACAATGCTCCAAACCTCCGAAGGACTTCCTCTTCTTCATCTGATATAAGTAGTGCCTCCCTGTTTGGTCCGAATGATTCAGGTTCTTCGAAGCGAACAAACTATGTTTATTTTGACGAAAAGCTTTTTGTGCTGTCACTTTACAAGGTGTTGGTTTCTGTGTCAGAAACTAGTGCCATAGTTCTGTACATTAGGGATGTTGACAAGCTATTCCTTAGATTGCCGAGAATGTATAGTATGTTGCAAAGGCTAATGAAGAAACTGACAGGGTCAGTGTTGATACTTGGTTCCCAAGTGGTGGATTCAGAATACAATAAAGAAGTTGATGAACGGCTGGGTATATTATTTCCTTACAACATTGAGATCAAACCCCCTGAAGATGAGACTCAATCCGGCAACTGGAAAGCCCAACTAGAAGAGGACATGAAAGTGTTTCAGTTTCAAGATAACAGAAACCACATTGCTGAAGTTCTAGCAACAAGTGGCATCGATTGTGATGACTTGCATTCAATCTGCCACGCTGACACTATGCTACTCAGTAACTATATCGAGGAAGTCGTCGCATCTGCAATTTCTTATCATTTGATGAATACTAAGGATCCAGAATACCGAAACGGAAAGCTAGTTCTATCGGCCAAGAGTTTGTGTCAGGCACTGAATCTGTTCCAGGAAGGCAAAGTCAGTGGAAAGGATAACACAAAGCCTAATGAGACTAAGGATGATGCTGGAGAAGATGCTAGTGGTGCAAAGAATGATGCCCAAGCACCTGAAAAAAGCGAGGCAGAGAAATCCAACCCAGTAGTAACAAAGAAGGATGGCGAGAATACTACTCCTGCAAAAGCAGCTGAAGCTCCTCCGGACAATGAGTTCGAGAAGCGTATAAGACCAGAGGTGATACCTGCAAATGAGATAGGGGTTACATTTGGAGACATTGGTGCATTGGATGACATTAAAGAATCACTTCAAGAGGCGGTGATGCTTCCCCTTAGAAGGCCAGACCTTTTCAAAGGAGGCCTTCTAAAGCCTTGCAGAGGTATATTGCTTTTCGGGCCTCCTGGTACAGGAAAAACAATGCTTGCAAAGGCCATTGCAAACGAAGCAGGAGCAAGTTTCATTAATGTTTCAATGTCCACCATAACTTCAAAGTGGTTTGGAGAAGACGAGAAGAATGTTCGAGCTCTGTTCACGCTGGCAGCGAAGGTTGCTCCGACTATTGTTTTTGTTGATGAGGTTGATAGCATGCTTGGGCAGCGTAGTAGAGCTGGAGAGCACGAGGCAATGAGGAAGATTAAAAATGAATTCATGACTCATTGGGATGGACTATTGACAAAGCCTGGTGAGCAGATTCTTGTTCTTGCTGCAACCAACAGGCCATTTGATCTCGATGAGGCTATTATAAGACGCTTTGAGCGCAGGATTATGGTTGGTCTTCCATCTGCTGAAAACCGCGAAGGCATCTTAAAAACTCTTCTATCTAAGGAAAAACATGAAAATATAGACTTCAAAGAGCTTGCAACCATGACAGAAGGATATAGCGGGAGTGATCTTAAGAATTTGTGCATGACGGCGGCTTATCGACCTGTTAGGGAGCTACTAAAGCAGGAGACGATGAAAGAAGTGGAAAGGAAGAAGAAAGCCGCACAAGGACAAATCTCAGAGGATATGTCCAATGTTAACGACGATAAAAAAGGCCAATCAATTGTCCTGAGGCCTTTGACCATGGAAGACATGAAAAAGGCAAAGAATCAGGTAGCTGCAAGTTCTGCTGCAGAAGGATCAATAATGAGCGAGCTGAAGCAGTGGAATGATTTGTATGGAGAAGGAGGGTCAAGAAAGAAAGAGCAACTCACTTATTTCCTATAG 2001 0.4308 MERMSGLFSSFSLIPSASEARGTHRRQRSSGLENRQSSAANGNENFNNAPNLRRTSSSSSDISSASLFGPNDSGSSKRTNYVYFDEKLFVLSLYKVLVSVSETSAIVLYIRDVDKLFLRLPRMYSMLQRLMKKLTGSVLILGSQVVDSEYNKEVDERLGILFPYNIEIKPPEDETQSGNWKAQLEEDMKVFQFQDNRNHIAEVLATSGIDCDDLHSICHADTMLLSNYIEEVVASAISYHLMNTKDPEYRNGKLVLSAKSLCQALNLFQEGKVSGKDNTKPNETKDDAGEDASGAKNDAQAPEKSEAEKSNPVVTKKDGENTTPAKAAEAPPDNEFEKRIRPEVIPANEIGVTFGDIGALDDIKESLQEAVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIVFVDEVDSMLGQRSRAGEHEAMRKIKNEFMTHWDGLLTKPGEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREGILKTLLSKEKHENIDFKELATMTEGYSGSDLKNLCMTAAYRPVRELLKQETMKEVERKKKAAQGQISEDMSNVNDDKKGQSIVLRPLTMEDMKKAKNQVAASSAAEGSIMSELKQWNDLYGEGGSRKKEQLTYFL 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271962g00013 666 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 351 525 - -
Stsc271962g00013 666 Pfam AAA+ lid domain 544 587 IPR041569 -
Stsc271962g00013 666 MobiDBLite consensus disorder prediction 18 74 - -
Stsc271962g00013 666 SMART AAA_5 388 525 IPR003593 GO:0016887
Stsc271962g00013 666 MobiDBLite consensus disorder prediction 32 74 - -
Stsc271962g00013 666 Pfam ATPase family associated with various cellular activities (AAA) 392 522 IPR003959 GO:0005524|GO:0016887
Stsc271962g00013 666 Gene3D - 351 523 IPR027417 -
Stsc271962g00013 666 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 82 665 - -
Stsc271962g00013 666 ProSitePatterns AAA-protein family signature. 495 514 IPR003960 GO:0005524|GO:0016887
Stsc271962g00013 666 MobiDBLite consensus disorder prediction 301 315 - -
Stsc271962g00013 666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 594 IPR027417 -
Stsc271962g00013 666 MobiDBLite consensus disorder prediction 272 340 - -
Stsc271962g00013 666 Gene3D - 524 597 - -
Stsc271962g00013 666 MobiDBLite consensus disorder prediction 276 293 - -
Stsc271962g00013 666 Coils Coil 583 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271962g00013 Stsc-Chr271962 70056 73187 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271962g00013 352 597 Calmodulin-binding Proteins AT3G56690 40.000 7.82e-46 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271962g00013 - - gmx:100804099 958.362