Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271961g00027 ATGGCTCAAACACAACCACCGATCATCAAAGTCCATCAAGTTTACAAGGTAACACCGTCACAAACCACCACCACAACCACCACACTTCCCTTAACCTACTTCGACTTGCTATGGACAAGGCTTCCACCAGTTGAGCGTCTCTTCTTCTACCAACTCCCAAACCCAACCATCTCTTTCTTTGATTCACTTCTTCCCAATCTCAAACACTCCCTTGAACTCACTCTCCAACACTTCTTCCCCCTCGCCGGTAACATCACTTGGCCACACCACTCTCCCATTCCCATCATCACCTACGTCCCCGGTCATGATTCCGTTCCTCTCACCGTTTCCGAATCAAACGAAGATTTCAACCACATCAGCTCCGACTTCTGTGAGGTTTCTAAACGGCGCCGTTTGGTACCCAGCTTGACCATTTCCGATGAGAAAACATCTTTGCTTGCATTACAGATTACTCTCTTTCCAAACTCCGGCTTCGTAATCGGAATAACAACACACCATGCAGCTGCCGACGGGAACTGCTCAACACTTTTTCTAAAAGCTTGGGCCTATACGTGCTCCAAGATCATTGAAAATCCATCTCTCTCATCATTGCCATCGTTGTTGTCGTTACCAGAAAATCTAAGACCGTTTCTTGATAGATCCGTTATCAAGGACCCCAACGGAGGACTCACCCAATCATTTGCCGACACGTGGCTGAACTTCAATGGACCAAACAATAAGAGCGTCAAGCTCTGGGAAACTAACAACAGCGAAGCAGCACAAATCGTCGATACTGAATCGGTTAAAAGAGTGTTTAAATTGAATCCCTCGCATATTGAAAAGCTCAAGAACTATGGGAAATCGAAAACCGGTACAGTTAAGGTTTCAACTTTTTCTGTTACAGTTGCTTATTGCTTATCATGCCTAGTGAAAACAGAAGAAACAGAGAACGAGGACGTTGTTCTTTTGTTCACTGTGGATTGTAGATCAAGATTGGATCCAGTGATTCCTCCAAGCTATTTCGGCAACTGCCTCTTGACGCGTTTGGTTTCGGTAGAGAAAGAGAAGGTGATGGGGAAGGAAGGATTTGTTACCGTGCTGAAAGGGATAAGCGAGGTTTTGATTGGGTTGGAGAGTGGGGTTCCGAATGACGAAGATAAATTGATGAAGAAGGTTGAATCTGCTGTTTTGGAAGGGAAGAGAATTTACTCCATTGCAGGTTCAGTAAGGTTTGGGGTTTATAGGATTGATTTTGGATATGGAAGGCCTAAGAATGTTGATGTTGCTTCGGTGGATAAAACTGGTGCTTTTGCACTTTCTGAGAGTAGAGATGGTGATGGTGGTGTTGAGATTGCTCTGACTTTGAAGAAGAGACAAATGGAGGCCTTTTCATCTCTTTTTTATCACCAAATTCAATCTTTTCCAATAGGCCAAAGATTGGAGGCTCAATTAGCAAGGGGCAATCCTCATTGTCCGACCTGTACCTATAGAATCCCAACTTGTGAGGAGCTCTCACAAGTCGTATGCCGAATTATCCGTTGGGTGAATAATCTTGACTTGGGGCAACACCAGAGGAGGTTACATCTCCGGAAAGGCAACTCACGCCACTTATGGGACAGTTTGTCCATGTCACCTAACAAACCGCTTCATAACTCCACACAGCTTGTAACCGCATCGGAGTGCCTTGCAGGTACACCCCCAACCCATTCTAGCGAAGACTCTTGGAAGTTGCGCTTTGGGCTCGTCAGGAAGCAGGTTTCTGGATTCCTCTCGTAG 1755 0.4547 MAQTQPPIIKVHQVYKVTPSQTTTTTTTLPLTYFDLLWTRLPPVERLFFYQLPNPTISFFDSLLPNLKHSLELTLQHFFPLAGNITWPHHSPIPIITYVPGHDSVPLTVSESNEDFNHISSDFCEVSKRRRLVPSLTISDEKTSLLALQITLFPNSGFVIGITTHHAAADGNCSTLFLKAWAYTCSKIIENPSLSSLPSLLSLPENLRPFLDRSVIKDPNGGLTQSFADTWLNFNGPNNKSVKLWETNNSEAAQIVDTESVKRVFKLNPSHIEKLKNYGKSKTGTVKVSTFSVTVAYCLSCLVKTEETENEDVVLLFTVDCRSRLDPVIPPSYFGNCLLTRLVSVEKEKVMGKEGFVTVLKGISEVLIGLESGVPNDEDKLMKKVESAVLEGKRIYSIAGSVRFGVYRIDFGYGRPKNVDVASVDKTGAFALSESRDGDGGVEIALTLKKRQMEAFSSLFYHQIQSFPIGQRLEAQLARGNPHCPTCTYRIPTCEELSQVVCRIIRWVNNLDLGQHQRRLHLRKGNSRHLWDSLSMSPNKPLHNSTQLVTASECLAGTPPTHSSEDSWKLRFGLVRKQVSGFLS 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271961g00027 584 Pfam Transferase family 12 462 - -
Stsc271961g00027 584 Gene3D - 8 243 IPR023213 -
Stsc271961g00027 584 SUPERFAMILY CoA-dependent acyltransferases 264 465 - -
Stsc271961g00027 584 Gene3D - 257 467 IPR023213 -
Stsc271961g00027 584 PANTHER - 9 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271961g00027 Stsc-Chr271961 110975 114213 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271961g00027 9 461 Monolignol Biosynthesis Gene Families AT5G48930 24.731 6.10e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271961g00027 - - gmx:100800849 464.536