Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271961g00025 ATGGCGCAATGGTCCCCATCATTCTTCAAAGTCCACCAAGTTTACCAGGTTGCGCCGCCACAAGGCACCACCACCTCAGCCACCCTTCCCTTAACCTTCTTCGACTTGCTATGGCTAAGGCTTCCCTCCACAGAGCGCCTTTACTTTTATCAATTCCAAAACCCAACCATTTCTTTCTTTGATTCAATCCTTCCCAATCTCAAACGCTCCCTTGAACTCACTCTCCAACACTTCTTCCCCCTCGCCGGTAACATCACCTGGCCACAGCACTCTCCCATCCCCACTATCACCTACATCGCCGGACAAGATTCCGTCTCTCTCACCGTCTCTGAATCCCACGAAGATTTCAACCACCTTTGCTCCAATCTCTGCCAAGTTTCCAAGTTCCAACCATTAGTACCACGCTTGAGTATCTCCGATGATAAGGCTTCTTTGCTTGCGTTGCAAGTCACCTTCTTCCCAAACTCCGGCTTTTGCATTGGAATAACAACTCATCACGCCGCTTTCGATGGAAACTGCTCAACCATGTTCATGAAAGCATGGGCCTACACATGCTCCAAGATCTCTCAAACTCCATCCATGTCTTCTTGGTCACTTCCTGAGAATCTAACACCGATCTTTGACAGATCAGCTGTCAAGGATCCAAAGGGAATTGCGGAGTTATACGCCAACACATGGTTGAACTTCGGCGGTGAAAACAATCGGAATCTCAAAATATTGGAGACGAACACGGAAGCAAGAACCGAGGTAGTTAAAGGGGTGTTTGAATTGAAGCCTTCACAGATTCAGAAGCTGAAGCAGTATGCAAAATCAAATAACTTGGAAGCCAAGGTTTCAACTTTCACGGTTACTAGCTCTTATTTGTTGCATTGCTTGGTGAAAGCAGAGGAACCAGAGTGCAAAAAAGTTGCATTTTTGTTTAATGTGGATTGCAGATCTCGTTTGGAGCCTCCATTGGGAGCATCATACTTTGGAAACTGCGTGGCGATTCCATTGATATTGGTAGAGAAGGAGAGGATAGAAGGGAATGATGGGTTCTTGAATGCTCTGAAGGTGATAACAGAGGTGTTATATGATTTGGAGAATAATGAGAATGGGGTGCTGAATGGGGCAGAGAATTACATGTTAATGGTGCAATCTGTGGTTGGAGAAGGGAGTAGATTGTACTCGCCTTCTGGTTCGCCTTGGTTTGGAGTTTATGGGGTTGATTTTGGATTTGGAAGGCCTAAAAGAGTTGATGTTGCTTCAGTTAATAAGACAGCTTCGTTTTCTCTTTCTGAAGGTAGCAATGTTGATGGTGGAATTGAGATTGGTTTGGCTCTTGACAAGAATCACATGGAGGCTTTTGCTGCTCTTTTTCATCGGGAAATTGAAACCTTTTAA 1383 0.4512 MAQWSPSFFKVHQVYQVAPPQGTTTSATLPLTFFDLLWLRLPSTERLYFYQFQNPTISFFDSILPNLKRSLELTLQHFFPLAGNITWPQHSPIPTITYIAGQDSVSLTVSESHEDFNHLCSNLCQVSKFQPLVPRLSISDDKASLLALQVTFFPNSGFCIGITTHHAAFDGNCSTMFMKAWAYTCSKISQTPSMSSWSLPENLTPIFDRSAVKDPKGIAELYANTWLNFGGENNRNLKILETNTEARTEVVKGVFELKPSQIQKLKQYAKSNNLEAKVSTFTVTSSYLLHCLVKAEEPECKKVAFLFNVDCRSRLEPPLGASYFGNCVAIPLILVEKERIEGNDGFLNALKVITEVLYDLENNENGVLNGAENYMLMVQSVVGEGSRLYSPSGSPWFGVYGVDFGFGRPKRVDVASVNKTASFSLSEGSNVDGGIEIGLALDKNHMEAFAALFHREIETF 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271961g00025 460 Pfam Transferase family 17 450 - -
Stsc271961g00025 460 SUPERFAMILY CoA-dependent acyltransferases 254 458 - -
Stsc271961g00025 460 PANTHER - 10 459 - -
Stsc271961g00025 460 Gene3D - 9 237 IPR023213 -
Stsc271961g00025 460 Gene3D - 247 460 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271961g00025 Stsc-Chr271961 98447 99829 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271961g00025 44 449 Monolignol Biosynthesis Gene Families AT5G48930 25.176 3.91e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271961g00025 - - gmx:100785084 478.018