Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271961g00023 ATGGCTTCCGCAACGTTTTTCATCTCTCCCCTTCTCTTTCTTCACATCACACTAGCTCTTGCCAACATTACCATAAACTCAACACTCTACACCAACAACAACAACAACAATCCATGGCGTTCACCTTCAGGTGAATTTGCTTTTGGATTTCAGCAAATCAAAGACACAAAACTCTTCATAGTTGCCATATGGTACGACAAAATTCTAGAAAAAACCATAGTTTGGAATTCATATTCACAGAGCAACAACCCAACACCAACAGGCTCAAAGATTCAGCTAACACAATCAGGTCTAAAACTAACAACTCCCAACGGTGAATCCACATGGATAGCACAAACCAACAACACTACTGTTTCCTATGGTTCTATGCTTGACACTGGAAACTTTGTTCTTGCAAGCAGTGATAACAACAACACACTTGTGTGGCAAAGTTTCAAGAACCCCTCAGATACTTTGTTGCCAAGCCAAATCCTTGAGCCTAATCTCACTCTCACTTCCAGATTGAAAGATTCAAACTACACAAGAGGGAGGTTTCAACTCTATTTTCAGGATAACTTCATCTTGTTTAGTCCTCTAGCATGGCCTACCGAACTTCGCTACACTTACTATGAAGATTTCGGACCTGCTGCACACTTGGTGTTTGATGAAAGGGGTGAGATATATGCAGAGGCAAAGAATGGTACCAGAACACCACCAAAAGAAGATCCTAACTGGAGACCCGATTTAGTTCTTGATACTTGGAATAATTACTACAGAGCAACGCTTGATTACTATGGAGTTTTCACTCAGTATGTTCATTCCAAGGACTCGAATTCTCAGCAGCAAGGGTGGAGAATTTTAAGGTACATCCCTGGTGACATTTGCACAAGTGTTCTTGATGGTTATGGTTATGGAAGTGGTGCTTGTGGTTACAATAGTTATTGCTCCATGTTAGAACAGAGGCCTACTTGCACTTGCCTTGATGGATATACTCTGATTGATCCAAGCAATGTGTTTGGTGGATGCCAACCAAATTTCACACTTGGTTGTGGAGCTGATAACAGTGATGAAGAATTACAAGCGCGCCCAGAAGAGCTGTATACCTTTAAGGTTTTGAATGATGTGGATTTTCCCCTTAATGATTATGAGAAGATTCAACCTTACACTCTAGATGCGTGCCAACAAGATTGTTTAAAAGATTGCATTTGTGCTGTTGCAATCTATGACAATCAAACCTGCTGGAAGAAGAGGTTTCCTCTTTCTTTTGGAAAAGCAAAAAGTGGAGGTCAAACAATATTTATCAAAACAAGAGTTGCACCTCTTGGCACTCCTCCTGGTTCTAAATCAAAGAAAGATGATGATAACAATGTTAAGCCAGTTTTTATTGGGTTACTTACTGGATTGCTTGTCATCAATGTTGTACTCCTGGCTGCAGTTCTTTCGGTTATTCGCCTGAAGAAGAGAAAAAGGGAAATCAAAGTCTCAAGTCTTCTAGAAACAAATGTGCATTCGTTTAGCTATGAAGCATTGAAGGAGGCGACACGGGGTTTTAGCGAAGAACTGGGAAGGGGTTCCTTTGGAATTGTTTACAAAGGGACCATAGAATCAAGGTTTTATAACGTGGTGGCAGTCAAGAAGCTTGACGGATTAGCAGAAGGACGAGAAAAGGAATTCAAGGCTGAGTTGAATGCCATTGGTAAAACCTCCCACAAGAATTTGGTAAGGCTGATTGGATTCTGTGATGAGGGAACCAACAGATTGCTTGTCTATGAGTTCATGAGCAATGGCTCTCTGGCAAACTTCCTATTTGCACTAGACAAACCAAATTGGGATCTAAGGGTAAGGTTTGGTTTGGGGATAGCAAGAGGATTAGTGTACCTGCATGAAGAGTGTGACACTCCTATCATTCACTGTGACATAAAACCTCAGAATATACTCATAGATGATAACTTCATTGCCAAGATATCTGACTTCGGGTTGGCCAAGTTGTTGTTGTCTGACCAGAGCAGGACCAAAACCATGATCCGAGGAACAAGAGGTTATGTTGCTCCTGAATGGTTCAGGAATGTTCCGGTGACAGTTAAGGTGGATGTTTATAGCTTTGGGGTGATGTTACTAGAGATCATTTGCTGCAGAAGGAGTGTGCTGATGTTGGAGTCCGGCGGCGGGGAGGAAGAGAAGGCAGTGCTGACTGATTGGGCTTATGATTGCTATTTAGAAAGCAGAATAAATGATTTGGTGGATGGTGATACAGGAGCTCTAGCTGACAAGGGAAGGTTACAAAGGTGGGTGAAGATAGCAATTTGGTGCATTCAAGAGCATAATGAAATGAGGCCAACAATGGGGATGGTCTTGCAAATGCTTGAAGGCTTTGTTGAAGTCTCTGATCCACCATCACCCTTTTCTTGA 2388 0.4183 MASATFFISPLLFLHITLALANITINSTLYTNNNNNNPWRSPSGEFAFGFQQIKDTKLFIVAIWYDKILEKTIVWNSYSQSNNPTPTGSKIQLTQSGLKLTTPNGESTWIAQTNNTTVSYGSMLDTGNFVLASSDNNNTLVWQSFKNPSDTLLPSQILEPNLTLTSRLKDSNYTRGRFQLYFQDNFILFSPLAWPTELRYTYYEDFGPAAHLVFDERGEIYAEAKNGTRTPPKEDPNWRPDLVLDTWNNYYRATLDYYGVFTQYVHSKDSNSQQQGWRILRYIPGDICTSVLDGYGYGSGACGYNSYCSMLEQRPTCTCLDGYTLIDPSNVFGGCQPNFTLGCGADNSDEELQARPEELYTFKVLNDVDFPLNDYEKIQPYTLDACQQDCLKDCICAVAIYDNQTCWKKRFPLSFGKAKSGGQTIFIKTRVAPLGTPPGSKSKKDDDNNVKPVFIGLLTGLLVINVVLLAAVLSVIRLKKRKREIKVSSLLETNVHSFSYEALKEATRGFSEELGRGSFGIVYKGTIESRFYNVVAVKKLDGLAEGREKEFKAELNAIGKTSHKNLVRLIGFCDEGTNRLLVYEFMSNGSLANFLFALDKPNWDLRVRFGLGIARGLVYLHEECDTPIIHCDIKPQNILIDDNFIAKISDFGLAKLLLSDQSRTKTMIRGTRGYVAPEWFRNVPVTVKVDVYSFGVMLLEIICCRRSVLMLESGGGEEEKAVLTDWAYDCYLESRINDLVDGDTGALADKGRLQRWVKIAIWCIQEHNEMRPTMGMVLQMLEGFVEVSDPPSPFS 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271961g00023 795 Gene3D Transferase(Phosphotransferase) domain 1 586 789 - -
Stsc271961g00023 795 FunFam S-receptor-like serine/threonine-protein kinase 477 585 - -
Stsc271961g00023 795 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 195 IPR036426 -
Stsc271961g00023 795 Pfam Protein kinase domain 511 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271961g00023 795 PIRSF SRK 1 795 IPR024171 GO:0004674
Stsc271961g00023 795 ProSitePatterns Protein kinases ATP-binding region signature. 514 539 IPR017441 GO:0005524
Stsc271961g00023 795 Pfam D-mannose binding lectin 72 161 IPR001480 -
Stsc271961g00023 795 Gene3D Phosphorylase Kinase; domain 1 471 585 - -
Stsc271961g00023 795 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 586 789 - -
Stsc271961g00023 795 CDD PAN_AP_plant 339 429 - -
Stsc271961g00023 795 ProSiteProfiles Protein kinase domain profile. 508 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271961g00023 795 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 18 146 - -
Stsc271961g00023 795 SUPERFAMILY Protein kinase-like (PK-like) 485 782 IPR011009 -
Stsc271961g00023 795 Gene3D - 22 146 IPR036426 -
Stsc271961g00023 795 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 28 792 - -
Stsc271961g00023 795 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Stsc271961g00023 795 ProSiteProfiles Bulb-type lectin domain profile. 20 144 IPR001480 -
Stsc271961g00023 795 SMART serkin_6 508 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271961g00023 795 SMART blect_4 26 148 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271961g00023 Stsc-Chr271961 86906 89415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271961g00023 494 786 Receptor kinase-like Gene Family AT5G45780 41.472 9.55e-65 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc271961g00023 Pkinase 7.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271961g00023 - - adu:107487498 1174.46