Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271961g00021 ATGCTCTCCACTTGGATCCCCGCCGCCGGAAGCGGCTCCGACCACTGTTCATGGAACGGCGTACTCTGCGACTTGGCCTCGCCGCCGCGCGTAGTAGCCATCAACCTCACCGGAAACGGCCGTAGCAGCCGAAGCTTCTGCTCCGATTTCACCCAATTCCCTCTATACGGCTTTGGAATCAGGCGGAGCTGCAACGGAAGCGGCGGCTCCCTCTTCGGAAAGCTTCCTTCGGTTATCGGCGAGCTTTCCCAGCTCAGGATCCTCTCTCTACCTTTCAACGGCATTGACGGCGAGATTCCCGGCGAAATCTGGGGTTTGCAGAACTTGGAGGTGCTTGATCTAGAAGGGAACTCAGTGACCGGCCACCTACCGTTCAGGTTCGAAGGTTTGAGGAAGCTGAGGGTTCTGAATTTAGGGTTCAACAAATTGATTGGGGAGATACCGAGTTCAATTGCATCACTCGAGAGCTTGGAGGTTCTGAATTTGGCAGGTAATGGTTTGAATGGTTCTGTTCCTGGTTTCTTAGGTAGGCTTAGAGGGGCGTATCTGTCATTTAACGAACTCGCCGGCGTTATCCCGGAGGACATAGGGAACAGTTGTGGGAGCCTTGAGCATCTGGATTTGTCAGTGAACTTCTTGGTCCAAAGCATTCCTGTAAGTTTAGGGAACTGTACTCGGTTGAAGACTCTGCTTTTGTATTCGAATCTTTTGGTAGATGCCATTCCTAGTGAGTTTGGAAAGCTTAAGAGCCTTCAAGTGTTGGATGTTTCAAGGAACACGCTCAGTGGTCCAGTGCCACGTGAGCTAGGGAACTGCTCGGAGTTGTCTGTCCTTGTGCTGTCAAACCTATTTGATCCCACCGGAGGTGCGGCGGAAGATTCCAGGGATGATTCTTCTGCAGGGCAGCCGGTTTCTCTGAATGAAGAATTCAATTATTTTGAAGGTGCATTGCCTGCGGAGGTTGCGCTGCTTCCAAAACTGAGGGTGTTGTGGGCTCCCATGGTTAACCTAGAAAATGATTTTCCGAGCAATTGGGGCGGTTGTGACAGCTTGCAGGTGGTTAATTTGGCTCAGAATTACTTCACTGGAGAGTTCCCCAACCAGCTTAAGTCCTGCAAGAAGCTGCATTTCCTTGATTTGAGCTCAAACAATTTCACTGGTGAGCTTTCTCCTGAACTTGGTGTTCCATGCATGACTGTCTTTGATGTTAGTGGGAACATTTTGTCCGGTTCGATACCTGAGTTCATTGCTGATATCTGTCCACCTGTTCCTTCATATAATGGGAATCTCTTTGAATTTAATGACTTGTCCCTGCCATATGTATCATTTTTTATGGCGAACATTAGGGATAGAACTTCCATTTTGCCATCATTAGGAGGATTCGGTCTATCTGTGTTCCATAATTTTGGGCTAAACAACTTAAGTGGCATTCGTTCTCTGCCAATAGCAACTGACCGGCTAGGGAAAGAAACTACTTACACATTTATTGTTGGACAAAACAAGATTTCCGGGCCTTTACCGACAAATCTGTTTGATAAATGTGACCGCGTAGGTTCGTTGCTATTAAATGTCAGTTATAATAACTTATCTGGTAAGATTCCTTCCGGTGTTGGCGGAATATGCAAATCACTGCGATTTTTGGACGCATCTGGAAATCATATTTCGGGAGTAATTCCCGACGGTTTTGCGGACTTGGTCTCTCTTGTTGCTCTTAACTTAAGTCGGAATCAGTTAGAAGGTCAAATTCCTTCCAGCCTTGGTCAATTGAAGGATCTAAAGTTTCTCTCTTTGGCACGTAATAATTTAAGTGGCTCGATTCCTTCCAGCTTGGGGCAGCTGCGCTACTTAGAAGTTTTGGACCTTTCTTCCAACTTGCTTACTGGTGAGATCCCTGAGGCTATTGTGAACATGAGAAACCTAACTGATGTGCTCCTTAACAACAACAAGCTTTCTGGACACATACCTCCTGGTTTGGCTAGCCTCCATACTCTCTCTGCATTTAATGTGTCTTTCAATAACTTATCTGGGTCCTTGCCATCACATAGCAGCTCAATTAAATGCAGCAGTGCTGTGGGGAATCCACTTATACGATCTTGTCGTGGATTTTCTCTCTCTGTGCAGTCACCAGATCAACAAGTGCAGGCAACAGATAATTCTGAGAGTGCTGCACCAGAACAGGCTTCTAGCAGTAAGAGTGGGTTCAACTCCATTGAAATAGCATCCATAACTTCTGCATCAGCCATCGTTTCTGTTCTTATAGCACTGATTATTCTGTTCCTTTACACACGGAAGTGGAAACCGATGTCCAGGGTTGCTGGGTCCACAAGAAAAGAAGTTATTGTGTTCACTGATATTGGGGTTCCATTGACATATGAAGATGTTGTCCGTGCCACTGGGAATTTCAATACGAGCAACTGTATTGGGAATGGAGGGTTTGGAACAACCTACAAGGCAGAGATAGCACCAGGGACTTTGGTGGCAGTCAAACGCTTGGCAATTGGACGCTTCCAAGGTGTTCAACAATTCCATGCAGAGATTAAGACCCTTGCAAGGCTTCATCATCCAAATCTTGTCACACTCATCGGTTATCATGCTTGTGAGACAGAGATGTTTCTCATATACAACTACCTGCCAGGTGGCAATCTGGAAAAGTTTATCCAGGAGAGGTCAACAAGAGCTGTGGATTGGAGAATTCTTCACAAGATTGCACTAGACATAGCCCGTGCACTTGCCTACTTGCATGATCAGTGTGTGCCTCGTGTCCTCCATCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATCTGTCCGACTTTGGATTGGCCAGGCTTCTGGGTACTTCAGAGACTCATGCTACCACTGGTGTAGCAGGAACATTCGGTTATGTTGCTCCTGA 2940 0.4558 MLSTWIPAAGSGSDHCSWNGVLCDLASPPRVVAINLTGNGRSSRSFCSDFTQFPLYGFGIRRSCNGSGGSLFGKLPSVIGELSQLRILSLPFNGIDGEIPGEIWGLQNLEVLDLEGNSVTGHLPFRFEGLRKLRVLNLGFNKLIGEIPSSIASLESLEVLNLAGNGLNGSVPGFLGRLRGAYLSFNELAGVIPEDIGNSCGSLEHLDLSVNFLVQSIPVSLGNCTRLKTLLLYSNLLVDAIPSEFGKLKSLQVLDVSRNTLSGPVPRELGNCSELSVLVLSNLFDPTGGAAEDSRDDSSAGQPVSLNEEFNYFEGALPAEVALLPKLRVLWAPMVNLENDFPSNWGGCDSLQVVNLAQNYFTGEFPNQLKSCKKLHFLDLSSNNFTGELSPELGVPCMTVFDVSGNILSGSIPEFIADICPPVPSYNGNLFEFNDLSLPYVSFFMANIRDRTSILPSLGGFGLSVFHNFGLNNLSGIRSLPIATDRLGKETTYTFIVGQNKISGPLPTNLFDKCDRVGSLLLNVSYNNLSGKIPSGVGGICKSLRFLDASGNHISGVIPDGFADLVSLVALNLSRNQLEGQIPSSLGQLKDLKFLSLARNNLSGSIPSSLGQLRYLEVLDLSSNLLTGEIPEAIVNMRNLTDVLLNNNKLSGHIPPGLASLHTLSAFNVSFNNLSGSLPSHSSSIKCSSAVGNPLIRSCRGFSLSVQSPDQQVQATDNSESAAPEQASSSKSGFNSIEIASITSASAIVSVLIALIILFLYTRKWKPMSRVAGSTRKEVIVFTDIGVPLTYEDVVRATGNFNTSNCIGNGGFGTTYKAEIAPGTLVAVKRLAIGRFQGVQQFHAEIKTLARLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRXXXXXXXXXXXXXXXXXXXXXXXXISVRLWIGQASGYFRDSCYHWCSRNIRLCCS 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271961g00021 979 Gene3D Ribonuclease Inhibitor 1 176 IPR032675 -
Stsc271961g00021 979 SMART LRR_typ_2 106 129 IPR003591 -
Stsc271961g00021 979 SMART LRR_typ_2 565 589 IPR003591 -
Stsc271961g00021 979 SMART LRR_typ_2 200 224 IPR003591 -
Stsc271961g00021 979 SMART LRR_typ_2 613 636 IPR003591 -
Stsc271961g00021 979 SMART LRR_typ_2 637 661 IPR003591 -
Stsc271961g00021 979 SMART LRR_typ_2 130 153 IPR003591 -
Stsc271961g00021 979 SMART LRR_typ_2 154 176 IPR003591 -
Stsc271961g00021 979 SMART LRR_typ_2 541 564 IPR003591 -
Stsc271961g00021 979 SMART LRR_typ_2 248 272 IPR003591 -
Stsc271961g00021 979 Coils Coil 922 924 - -
Stsc271961g00021 979 Gene3D Ribonuclease Inhibitor 291 421 IPR032675 -
Stsc271961g00021 979 Pfam Leucine rich repeat 226 282 IPR001611 GO:0005515
Stsc271961g00021 979 Pfam Leucine rich repeat 543 602 IPR001611 GO:0005515
Stsc271961g00021 979 SUPERFAMILY L domain-like 14 283 - -
Stsc271961g00021 979 Pfam Leucine Rich repeat 613 630 IPR001611 GO:0005515
Stsc271961g00021 979 Gene3D Ribonuclease Inhibitor 422 705 IPR032675 -
Stsc271961g00021 979 Gene3D Ribonuclease Inhibitor 177 285 IPR032675 -
Stsc271961g00021 979 SUPERFAMILY Protein kinase-like (PK-like) 782 924 IPR011009 -
Stsc271961g00021 979 Pfam Protein tyrosine and serine/threonine kinase 804 917 IPR001245 GO:0004672|GO:0006468
Stsc271961g00021 979 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 193 284 - -
Stsc271961g00021 979 FunFam Leucine-rich repeat receptor protein kinase EMS1 516 607 - -
Stsc271961g00021 979 Pfam Leucine Rich Repeat 132 154 IPR001611 GO:0005515
Stsc271961g00021 979 Pfam Leucine Rich Repeat 202 224 IPR001611 GO:0005515
Stsc271961g00021 979 ProSitePatterns Protein kinases ATP-binding region signature. 807 829 IPR017441 GO:0005524
Stsc271961g00021 979 Gene3D Transferase(Phosphotransferase) domain 1 879 926 - -
Stsc271961g00021 979 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 178 924 - -
Stsc271961g00021 979 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 765 876 - -
Stsc271961g00021 979 Gene3D Phosphorylase Kinase; domain 1 764 876 - -
Stsc271961g00021 979 SUPERFAMILY L domain-like 311 700 - -
Stsc271961g00021 979 FunFam Leucine-rich repeat receptor protein kinase EMS1 608 691 - -
Stsc271961g00021 979 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 303 480 - -
Stsc271961g00021 979 ProSiteProfiles Protein kinase domain profile. 801 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271961g00021 Stsc-Chr271961 80136 84490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271961g00021 1 924 Receptor kinase-like Gene Family AT3G02130 58.112 0.0 995
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Stsc271961g00021 PK_Tyr_Ser-Thr 3.4e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271961g00021 - - gmx:100819882 1276.54