Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271960g00025 ATGGCCGGTGCCAGTCCTCCGTTGCCGGTAGCATACCAAGCATGGACGAGTCTAGCAGTACCAGACTGGCTAAACAAAGGAGACAACTCATGGCAGATGGTATCAGCCACCCTGGTTGGGATCCAGAGCATGCCCGGATTAGTCATCTTGTACGGAAGCATAGTCAAGAAGAAATGGGCCGTCAACTCCGCCTTCATGGCCCTATACGCATTCGCAGCCGTTGTCATATGCTGGGTCACTTGGGCCTACAAGATGTCCTTCGGTGACAAGCTCTTGCCCTTCTGGGGCAAAGCTGGGCCCGCCTTGGGCCAGAAGTTCCTCATCAACCAGGCTGGGCTCCCCGCCACGACTCATTACTACCACACTGGGGCTGTGGAGACGCCGGAGATTGAGCCGTTTTATCCGATGGCGACGATGGTGTGGTTTCAGTGCGTTTTCGCTGCCATCGCTCTGGTTATCCTGGCGGGGTCCGTGCTTGCTAGGATGAACTTCAAGGCGTGGATGATGTTCGTGCCGTTATGGTTGACTTTCTCGTACACCATAGGTGCGTTCAGCTTGTGGGGTGGTGGGTTCTTGTTCCAGTGGGGTGTTATGGACTACTCTGGTGGTTACGTCATCCATCTTTCCTCCGGCGTTGCTGGCTTTGTTGCTGCTTATTGGGTTGGGCCAAGGTCGAAGAAGGACAGGGAGAGGTTCCCACCAAACAACGTGCTACTAACCCTGACGGGAGCGGGGCTGCTGTGGCTGGGGTGGGCAGGGTTCAACGGAGGGGACCCGTACTCGGCGAACATAGACTCGTCGATGGCGGTGCTGAACACGAACGTGTGCGCGGCGACGAGCCTGTTAGTGTGGACGTGGCTTGATGTGATATTTTTCCACAAGCCATCCGTTATTGGAGCCGTTCAGGGCATGATCACTGGCCTCGTTTGCATCACTCCCGCCGCAGGTCTGGTTCAAGGATGGGCAGCCATAGTTATGGGAGTTTTATCAGGAAGTGTGCCATGGTACACCATGATGGTATTGGGCAAGAAGCTCACTGTCTTCCAATTAGTCGACGACACTCTCGCCGTCTTCCACACCCACGCCGTCGCCGGCCTCCTGGGCGGCATCCTCACGGGGCTTTTCGCTGAGCCTCGTCTAAGCGGGCTGTTTCTTGCCGTGACCAACTCTAGAGGAGCGGTGTACGGAGGGTCGGCTGGAGGAGTCCAGATCCTGAAGCAAATCGTTGGGGGATTGTTCATCATTGGATGGAATGTGGTGGCCACTTCCATAATCTGTGTGGTGGTGAAGTTTGTGGTTCCATTGAGGATGACGGATGAGGAGTTGCTGATTGGTGATGATGCTGTTCATGGTGAAGAAGCTTATGCATTGTGGGGTGATGGAGAGAAGCTTAGCCTCTACAAAGATGATACCACTCAACATGGAATTGCAATGGCTTCCAGTGGTGCCACTCAAGTTGTCTAA 1464 0.5485 MAGASPPLPVAYQAWTSLAVPDWLNKGDNSWQMVSATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWVTWAYKMSFGDKLLPFWGKAGPALGQKFLINQAGLPATTHYYHTGAVETPEIEPFYPMATMVWFQCVFAAIALVILAGSVLARMNFKAWMMFVPLWLTFSYTIGAFSLWGGGFLFQWGVMDYSGGYVIHLSSGVAGFVAAYWVGPRSKKDRERFPPNNVLLTLTGAGLLWLGWAGFNGGDPYSANIDSSMAVLNTNVCAATSLLVWTWLDVIFFHKPSVIGAVQGMITGLVCITPAAGLVQGWAAIVMGVLSGSVPWYTMMVLGKKLTVFQLVDDTLAVFHTHAVAGLLGGILTGLFAEPRLSGLFLAVTNSRGAVYGGSAGGVQILKQIVGGLFIIGWNVVATSIICVVVKFVVPLRMTDEELLIGDDAVHGEEAYALWGDGEKLSLYKDDTTQHGIAMASSGATQVV 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271960g00025 487 ProSitePatterns Ammonium transporters signature. 199 224 IPR018047 GO:0008519|GO:0016020|GO:0072488
Stsc271960g00025 487 NCBIfam ammonium transporter 28 455 IPR001905 GO:0008519|GO:0016020|GO:0072488
Stsc271960g00025 487 FunFam Ammonium transporter 11 458 - -
Stsc271960g00025 487 SUPERFAMILY Ammonium transporter 23 437 - -
Stsc271960g00025 487 PANTHER AMMONIUM TRANSPORTER MEP2 16 464 IPR001905 GO:0008519|GO:0016020|GO:0072488
Stsc271960g00025 487 Gene3D Ammonium transporter AmtB like domains 11 473 IPR029020 -
Stsc271960g00025 487 Pfam Ammonium Transporter Family 31 455 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271960g00025 Stsc-Chr271960 114162 117476 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271960g00025 136 474 Inorganic Solute Cotransporters AT2G38290 70.206 9.33e-165 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271960g00025 K03320 - gmx:100785993 870.152