Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271960g00024 ATGTATATGTTTCACATAAATTTTATCCGGGATCCTCTCACAATATTGACAAGGTGGCTCATATTCCTTAGTGTCTTCAAACTCACCTATGCAGTCAAGGATCCTGATATAGAAGGTGAAGCTCTGCTTGATCTTTTGAAGAACCTGAATGATTCCAATAATCGAATAGAAGACTGGAACAGATTTATGGTGAGCCCGTGTTTCAGTTGGTCTCATGTCACTTGTAGAAACGGACATGTTGTATCTCTGGCCCTGGATTCAATTGGGTTCTCTGGAACACTTTCCCCCTCAATTCTCAAATTGAAATATTTGGTTAACTTGGAATTGCAGAACAACAAACTTTCAGGCACCTTGCCTGATTACATTGCGAACTTGACATCCCTGCAATATCTGAATCTTGCTAACAATAACTTCATTGGCTCTATTCCACCTTCATGGGCTCAACTTTCCACTCTCAGACATTTGGATCTTTCATCAAATGGTCTCACAGGAAGTATCCCAATGCAACTCTTTTCTGTTCCAGTGTTCAATTTTTCAAATACACAGCTTCTTTGCGGTTCTAAGTTGGAGCAACCATGTGATTCTAAATCAGACCCTCCAGCTTCAAACAAGAAATTGGAACTTGCAAAGGTAGCACAGTTTGCAAGTTGTGGCGCATTTGCACTTTTGTGTCTTGGTGCAATCTTTACATATAGACACCATCAGATGCACAAACAAAAAAGTGATGTCTTTGTTGATGTTTCAGGTGAGGATGAGAGCAAAATATCTTTTGGACAACTGAGAAGATTTTCATGGAGGGAACTCCAAATTGCTACAAAAAACTTCAGTGAAAGCAATGTAATAGGGCAGGGAGGATTTGGAAAAGTCTACAAAGGTATACTCTCGGATAACACAAAAATCGCCGTGAAACGCCTCACTGATTATCATAATCCCGGTGGAGAAGCTGCATTTGAGAGAGAAGTTAATCTGATAAGTGTTGCAGTTCATAGAAACCTCCTCAGACTAATTGGATTCTGTACAACCTCAACTGAGAGAATCCTTGTATATCCTTTCATGGAAAATTTAAGTGTAGCATATAGACTAAGAGATTTGAAAGCAGATGAGAAAGGTTTGGATTGGGGTGCAAGAAAACGTGTGGCTTTTGGTACAGCACACGGTTTGGAGTATCTGCACGAGCAATGCAATCCTAAGATAATACATCGCGATCTGAAGGCAGCAAACATCTTATTAGATGATGAATTCGAAGCGGTTCTTGGTGATTTCGGGTTGGCCAAGCTTGTTGACACAAGAATGACACATGTTACTACTCAAGTTCGCGGCACAATGGGTCATATAGCCCCTGAATACTTGTCCACTGGAAAATCATCCGAGAAGACTGATGTGTTTGGATATGGCATCACACTCCTTGAGCTAGTCACCGGCCAGCGCGCCGTAGACCTCTCCAGGCTTGAAGAGGAAGAGGATGTTCTCCTAATTGATCATGTAAAGTTATTATAG 1497 0.4108 MYMFHINFIRDPLTILTRWLIFLSVFKLTYAVKDPDIEGEALLDLLKNLNDSNNRIEDWNRFMVSPCFSWSHVTCRNGHVVSLALDSIGFSGTLSPSILKLKYLVNLELQNNKLSGTLPDYIANLTSLQYLNLANNNFIGSIPPSWAQLSTLRHLDLSSNGLTGSIPMQLFSVPVFNFSNTQLLCGSKLEQPCDSKSDPPASNKKLELAKVAQFASCGAFALLCLGAIFTYRHHQMHKQKSDVFVDVSGEDESKISFGQLRRFSWRELQIATKNFSESNVIGQGGFGKVYKGILSDNTKIAVKRLTDYHNPGGEAAFEREVNLISVAVHRNLLRLIGFCTTSTERILVYPFMENLSVAYRLRDLKADEKGLDWGARKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDTRMTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAVDLSRLEEEEDVLLIDHVKLL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271960g00024 498 ProSiteProfiles Protein kinase domain profile. 275 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271960g00024 498 Pfam Leucine rich repeat 104 162 IPR001611 GO:0005515
Stsc271960g00024 498 FunFam Nuclear pore complex protein NUP107 36 185 - -
Stsc271960g00024 498 SMART serkin_6 275 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271960g00024 498 ProSitePatterns Protein kinases ATP-binding region signature. 281 303 IPR017441 GO:0005524
Stsc271960g00024 498 Gene3D Phosphorylase Kinase; domain 1 244 351 - -
Stsc271960g00024 498 ProSiteProfiles Leucine-rich repeat profile. 127 149 IPR001611 GO:0005515
Stsc271960g00024 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 398 410 IPR008271 GO:0004672|GO:0006468
Stsc271960g00024 498 SUPERFAMILY L domain-like 39 182 - -
Stsc271960g00024 498 Gene3D Transferase(Phosphotransferase) domain 1 352 498 - -
Stsc271960g00024 498 FunFam Somatic embryogenesis receptor kinase 1 244 351 - -
Stsc271960g00024 498 Pfam Protein kinase domain 276 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271960g00024 498 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 21 493 - -
Stsc271960g00024 498 SUPERFAMILY Protein kinase-like (PK-like) 253 484 IPR011009 -
Stsc271960g00024 498 Gene3D Ribonuclease Inhibitor 35 195 IPR032675 -
Stsc271960g00024 498 FunFam Somatic embryogenesis receptor-like kinase 1 352 498 - -
Stsc271960g00024 498 Pfam Leucine rich repeat N-terminal domain 38 75 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271960g00024 Stsc-Chr271960 108256 111611 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271960g00024 25 498 Receptor kinase-like Gene Family AT5G65240 56.487 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Stsc271960g00024 Pkinase 3.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271960g00024 - - gmx:100800886 833.558