Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271960g00013 ATGTTAACTGCATCTGCTACCGCCACACTCGTCTCTCTTAACCGCGGTGCCACGCACCAATGGACCAATCTATTCCCAAGATTCAGGGGAACTACCACTTCCCCTTCCAAGATATTAGCCAATTCCCCCTCCAACTCCTTCCGCTTACGATGCTCCTCTTCTTCTTCCAACGCAGGTGGCGTTGCCTACCCCGTTTCCGAATCCGAAGAATCCCCCGCCAATTTCGTCTGGTCCGATTCCAAGAAACCTAGAATTTGCATATTAGGCGGTGGATTTGGTGGTTTATATACTGCTCTCAGGCTTGAGTCTCTTGAATGGCCTGACGATAAAACTCCTCAGATTGTTCTTGTTGACCAGTCTGAACGTTTTGTTTTTAAGCCCTTGTTGTATGAGCTTCTATCCGGAGAAGTAGATGAATGGGAAATAGCTCCTCGCTTCTCAGATTTGCTGGTAAACACTAGTATAGTGTTCTTCAAAGACAGAGTGAAGTGTTTGCATCCCTCTGACAATTGGAGAATGAATGAATCCCCCAAAGCATCTAGTTCTGCAGGAACTGTTCATCTTGAAAGTGGACTTCTTATCGAGTATGACTGGCTGGTTCTCTCATTGGGAGCTGAAACTAAACTAGATGTTGTACCAGGAGCAGCAGAATTTGCCTTTCCATTCTCAACACTCGAGGATGCTCGTAAAGTTAACAATAAATTGACAACATTAGAGAGAAAGACCTTTGGTAAGGACTTCCAAATTAACGTGGCTGTTGTTGGTTGTGGTTATTCGGGAGTTGAATTAGCTGCAACGATAGCTGAACGGTTACAAAATAAGGGAATTGTTAGGGCAATTAACGTCGACACAATTATCTGTCCAAATGCCCCACCTGGCAATAGGGAAGCTGCACTGAAAGTTCTTTCCTCCCGAAGAGTTGAACTTTTGTTGGGTTATTTTGTCCGCCGTATTCGGAGGGGGAGTGAGTTGAAATCTGAAGATTCCCCAACAGGGCTAGATGAGAGTAGAACTGAAGCAGCAAATGATTTTGAGAGATATATATTGGAGCTGCAGCCCGCTGAAAGAGGAAAAGAAAGTAAATTCATTGAAGCTGATCTTGTCTTGTGGACTGTTGGATCTAAGCCTCCTCTTGATCAGCTTGAACCTTCAGATGAACCATATGTACTTCCACTTAATGCCCGGGGTCAAGCGGAAACAGATGAAACTCTTCGTGTAAAGGGTCACCCACGGATATTTGCTCTTGGCGACTCTTCTGCACTAAGGGATTCAAAGGGAAGGATCCTTCCAGCCACGGCACAGGTTGCATTTCAGCAAGCAGACTTTACTGGTTGGAATCTGTGGGCTGCAATCAACGGTCGCCCGCTTCTTCCATTTAGGTTTCAGAATTTAGGTGAGATGATGACACTGGGAAGAAACGATGCCGCCATCTCTCCAAGTTTTGTGGAGGGGCTAACCTTAGAAGGACCTGTTGGCCATACTGCGAGGAAGATAGCATATTTAACGAGGCTACCAACAGATCAACATAGGCTAAAAGTGGGCATAAGCTGGCTTACAAAATCTGCTATTGATTCAGTGTCATTGCTACAAAGTACCTTAACAAAGGTTTTATCGAGCTCATAG 1623 0.451 MLTASATATLVSLNRGATHQWTNLFPRFRGTTTSPSKILANSPSNSFRLRCSSSSSNAGGVAYPVSESEESPANFVWSDSKKPRICILGGGFGGLYTALRLESLEWPDDKTPQIVLVDQSERFVFKPLLYELLSGEVDEWEIAPRFSDLLVNTSIVFFKDRVKCLHPSDNWRMNESPKASSSAGTVHLESGLLIEYDWLVLSLGAETKLDVVPGAAEFAFPFSTLEDARKVNNKLTTLERKTFGKDFQINVAVVGCGYSGVELAATIAERLQNKGIVRAINVDTIICPNAPPGNREAALKVLSSRRVELLLGYFVRRIRRGSELKSEDSPTGLDESRTEAANDFERYILELQPAERGKESKFIEADLVLWTVGSKPPLDQLEPSDEPYVLPLNARGQAETDETLRVKGHPRIFALGDSSALRDSKGRILPATAQVAFQQADFTGWNLWAAINGRPLLPFRFQNLGEMMTLGRNDAAISPSFVEGLTLEGPVGHTARKIAYLTRLPTDQHRLKVGISWLTKSAIDSVSLLQSTLTKVLSSS 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271960g00013 540 FunFam Alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial 80 513 - -
Stsc271960g00013 540 Gene3D - 80 513 - -
Stsc271960g00013 540 Coils Coil 540 540 - -
Stsc271960g00013 540 Pfam Pyridine nucleotide-disulphide oxidoreductase 84 440 IPR023753 GO:0016491
Stsc271960g00013 540 SUPERFAMILY FAD/NAD(P)-binding domain 80 446 IPR036188 -
Stsc271960g00013 540 PRINTS Pyridine nucleotide disulphide reductase class-I signature 84 106 - -
Stsc271960g00013 540 PRINTS Pyridine nucleotide disulphide reductase class-I signature 250 275 - -
Stsc271960g00013 540 PRINTS Pyridine nucleotide disulphide reductase class-I signature 412 419 - -
Stsc271960g00013 540 PRINTS FAD-dependent pyridine nucleotide reductase signature 365 381 - -
Stsc271960g00013 540 PRINTS FAD-dependent pyridine nucleotide reductase signature 85 104 - -
Stsc271960g00013 540 PRINTS FAD-dependent pyridine nucleotide reductase signature 250 268 - -
Stsc271960g00013 540 PANTHER APOPTOSIS-INDUCING FACTOR 1 17 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271960g00013 Stsc-Chr271960 34518 37453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271960g00013 36 441 Chloroplast and Mitochondria Gene Families AT4G21490 23.223 1.83e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271960g00013 K17872 - gmx:100795521 842.802