LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc271960g00012	ATGTCAAAGCTTCCATTTCCAAGTTATGGCAACTTAGAGAGTGGAACTGACAGCAGCTTTCACAAGTTCTTTGAGGGATGGCTTGTTGAGCAAAACCAATACCTGAAGGAGCTCGTCGCATCTGAAACAACAAAGCTCACAGATGACAAACTCCAGGCTCTTATTGGTGAAGTTGTTGAGCATTATGAGAACTATTACAAGGCCAAGTCAAAGTGGGCAAAGCATGATGTTTTGTCCATGCTCTCTCCAACATGGAGAAGCTCCTTGGAAGATGCTTTTCTTTGGATTGGTGGTTGGAGACCAAGCATGGCATTTCACCTTCTGTATTCCAAGTCTGGCTTGCAATTTGAGGCCAAGTTGAAGGAACTCCTTCAGGGTCTAAGAACATCTGATCTGGCTGATCTATCTGCAACTCAGCTAGCTCAAGTTGATGATATTCAGAAGAGGACAATCACTGAGGAGAGGGAGATCACAGATGTAATGGCAAGGCATCAAGAAACAGTGGCAGATGCATCAATGGTGGAACTTTCTCATGTTGTTTCTGAGATGTTAAGGGCCAAAGAAACTGAGGAGGAGGGTGGAAGAAAAGAGGTAGAGGAGAAGGTTGATTCAACTCTGATGCCAAAGGAGGAAGGATTGGAAGAGATTTTGCAAAGAGCTGATGATTTAAGGTTCAGAACACTTCAAGGCTGGTCACTTGGAGAAGAGGTCCTCCTCGAATACGTCTTGGTTTCAAAGAGGGCGGACTTGGCTTCCAAGAGGTTGACCGAGCTTGGAACGGCGTTGGGGTGGACCTGCAAGGCCACTCCGACGCTCAAGTCAGTAAAAGTGTATTAG	837	0.4576	MSKLPFPSYGNLESGTDSSFHKFFEGWLVEQNQYLKELVASETTKLTDDKLQALIGEVVEHYENYYKAKSKWAKHDVLSMLSPTWRSSLEDAFLWIGGWRPSMAFHLLYSKSGLQFEAKLKELLQGLRTSDLADLSATQLAQVDDIQKRTITEEREITDVMARHQETVADASMVELSHVVSEMLRAKETEEEGGRKEVEEKVDSTLMPKEEGLEEILQRADDLRFRTLQGWSLGEEVLLEYVLVSKRADLASKRLTELGTALGWTCKATPTLKSVKVY	278

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc271960g00012	278	ProSiteProfiles	DOG1 domain profile.	17	267	IPR025422	GO:0006351\|GO:0043565
	Stsc271960g00012	278	PANTHER	DOG1 DOMAIN-CONTAINING PROTEIN	19	230	-	-
	Stsc271960g00012	278	Pfam	Seed dormancy control	36	110	IPR025422	GO:0006351\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc271960g00012	Stsc-Chr271960	29824	31653	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc271960g00012	10	232	Calmodulin-binding Proteins	AT1G22070	26.457	3.53e-16	75.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc271960g00012	-		-	gmx:100784399	308.531