Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271960g00011 ATGGGCAAAGAGAATGGATCAGCAACGGCTAAGGAAGAACCCAGTGATGACGGTTACTCAAGTCTTGACACTGTTGAATTAGAATCTCAATCACGGCCTAGCCTTGACAAGGACACAGGTTTGCCAAGTTGCCGCGTCTGCCAATGTGCTGAATCTGATAAAAGGGGAGATGCTGCCCTAGAATTTTTGGGGATCACTCCGGTCGTCAAAGCTTGTAAACGGAATGGGGAAGATGGTGAGGTGAGGTCAGAAAACCAGGAAATTCAGAAAAATATGTCTTTTAACAGAAGTGTTGGAAACAAATCTGGGATGGTGGAATTCGTAGGCCCTAACGGGGAGGTTTTCGTGTGTAGAAGTGATGTGGAGATTGGTTTGTGTCATCAAGATGCATTGATTGAACTTGGTTGCTGTTGTAAGAATGATCTTGCTTTAGTACACTATGCTTGTGCACTCAAATGGTTTGTTAATCATGGATCAACAATTTGTGAAATATGTGGACACATAGCCAATAATATCAGGATCTCCGACTTCAATAAGGTTGTTGGTTCTCTGAAGGAATATGAAGCCTTGAGGGAGAGAACTGTCAGTGGGGATCCTGGTCCTGCTCCTGCTCAAGTTCATTCTAATAATAATACTGGTGTTGATCCTGATGCTGTGGCTGCTATCCGGAGGCAACGGTTAAGCGAGATTGCATTATGGTTTTGTCCTCATAATACCAGTAGTATAAACAACAATAGCAATGCGGACACAGTCTCGCAGGTTGTTTCTGAGCAGCCATCAAATTTTTTTACTGAAGATGCTGGCCCTGCACAGAGTCCTGCAACCAAGTGGGCCGTGGAAGGCACCGGGATCCTGCTTGCTACTGGCTTACTTACAATCACCCTTGCATGGCTGATAGCTCCTCGGGTTGGAAAGAAAACAGCCAAAAGTGGACTTCATATCCTACTTGGAGGTGTTTGTGCTTTAACAGTGGTTGTTTTCTTCCGCTTTTTTGTTCTTACCAGAATCAAGTATGGACCTGCACGGTATTGGGCAATCTTGTTCGTTTTCTGGTTTCTTGTGTTTGGAATATGGGCTTCACGGACACATGGCGCCCATACAACGTGA 1107 0.4481 MGKENGSATAKEEPSDDGYSSLDTVELESQSRPSLDKDTGLPSCRVCQCAESDKRGDAALEFLGITPVVKACKRNGEDGEVRSENQEIQKNMSFNRSVGNKSGMVEFVGPNGEVFVCRSDVEIGLCHQDALIELGCCCKNDLALVHYACALKWFVNHGSTICEICGHIANNIRISDFNKVVGSLKEYEALRERTVSGDPGPAPAQVHSNNNTGVDPDAVAAIRRQRLSEIALWFCPHNTSSINNNSNADTVSQVVSEQPSNFFTEDAGPAQSPATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHTT 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271960g00011 368 PANTHER ZINC FINGER, RING-CH-TYPE 16 335 - -
Stsc271960g00011 368 ProSiteProfiles Zinc finger RING-CH-type profile. 106 172 IPR011016 GO:0008270
Stsc271960g00011 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 175 IPR013083 -
Stsc271960g00011 368 SUPERFAMILY RING/U-box 124 168 - -
Stsc271960g00011 368 MobiDBLite consensus disorder prediction 22 37 - -
Stsc271960g00011 368 MobiDBLite consensus disorder prediction 1 39 - -
Stsc271960g00011 368 SMART ringv_2 116 166 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271960g00011 Stsc-Chr271960 21369 24746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271960g00011 1 358 C3H Transcription Factor Family AT5G08750 64.305 4.38e-155 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271960g00011 - - gmx:100805323 544.658