Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271960g00009 ATGAAAACTCTCTTCCTTGTCCCGTTCCTTGCACCAAGTGTCCCAGTTGGAAGCAGACCTTTCTCTCAACATTTAACCACCAAGTGCTTTGGCAAGCAACTTCACTTCCACAATCCATATGTTCTTTTCTCTTCATACACATGTTCTGCAACACTATCTGCTGTGCCGGAATTACAAGAGAAGGAAACATTTGATGGAGAAAAGGCTTCTTTGCTTGTCAAAGATCTCAGAAACACCTACAATACAGGGAAGACAAAGAGCTACGAGTGGCGAATTTCACAGTTGGAAGGCATAGCCAAGATGCTAGAAGAGAAGGAGAAGGAAATTCTTGAAGCTCTTTATAAAGACCTTTCTAAACCAAGATTGGAAGGATTTATCGCTGAGGTTTCTCAGGCAAAATCATCATGTAGTGAAGCAATTCAAGAACTAAAACACTGGATGAAGCCTGAAAAGATCAAAACTTCATTCACCACATTCCCATCATCAGCGGAGATTGTGTCAGAACCACTAGGAGTTGTGTTGGTCATCTCAACATGGAACTTCCCTTTCTTGTTATCAATGGATCCTGTGATTGGAGCCATATCAGCGGGTAACGCAGTGGTCCTGAAACCATCAGAAATTGCTCCAGCAACTTCATCAGTACTTCTAAATTTGATTGAAGGTTATCTAGATAACTCTGCAATCAGAGTTGTTGAAGGGGCTATTCCTGAAACAACTGCACTTTTGGAGCAGAAGTGGGACAAGATACTTTACACAGGTAGTGCTAGGGTAGGTCGCATTGTCATGGCTGCTGCCGCAAAGCACCTTACACCTGTAATTCTGGAACTTGGTGGAAAGTGTCCAGCTGTTGTTGATTCAGATGTTAATTTACAAGTTACTGCTAGGAGGATAATAGGTGGAAAGTGGGCATGCAATAGTGGACAAGCATGCATTGGTGTTGATTATATCATCACAAGAAAAGAATTTGCTCCAACACTGGTTAGATTGTAA 990 0.4192 MKTLFLVPFLAPSVPVGSRPFSQHLTTKCFGKQLHFHNPYVLFSSYTCSATLSAVPELQEKETFDGEKASLLVKDLRNTYNTGKTKSYEWRISQLEGIAKMLEEKEKEILEALYKDLSKPRLEGFIAEVSQAKSSCSEAIQELKHWMKPEKIKTSFTTFPSSAEIVSEPLGVVLVISTWNFPFLLSMDPVIGAISAGNAVVLKPSEIAPATSSVLLNLIEGYLDNSAIRVVEGAIPETTALLEQKWDKILYTGSARVGRIVMAAAAKHLTPVILELGGKCPAVVDSDVNLQVTARRIIGGKWACNSGQACIGVDYIITRKEFAPTLVRL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271960g00009 329 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 303 314 IPR016160 GO:0016491
Stsc271960g00009 329 PANTHER ALDEHYDE DEHYDROGENASE 69 328 IPR012394 GO:0006081
Stsc271960g00009 329 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 278 327 IPR016163 GO:0016620
Stsc271960g00009 329 FunFam Aldehyde dehydrogenase 77 281 - -
Stsc271960g00009 329 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 77 277 IPR016162 GO:0016491
Stsc271960g00009 329 Pfam Aldehyde dehydrogenase family 76 327 IPR015590 GO:0016491
Stsc271960g00009 329 SUPERFAMILY ALDH-like 72 327 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271960g00009 Stsc-Chr271960 18533 20599 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271960g00009 39 327 Aldehyde Dehydrogenase Gene Family AT4G34240 71.972 1.44e-143 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271960g00009 K00128 - gmx:100800699 531.561