Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271960g00008 ATGCTAGAAGAGAAGGAGAAGGAAATTCTTGAAGCTCTTTATAAAGACCTTTCTAAACCAAGATTGGAAGGATTTATCGCTGAGGTTTCTCAGGCAAAATCATCATGTAGTGAAGCAATTCAAGAACTAAAACACTGGATGAAGCCTGAAAAGATCAAAACTTCATTCACCACATTCCCATCATCAGCGGAGATTGTGTCAGAACCACTAGGAGTTGTGTTGGTCATCTCAACATGGAACTTCCCTTTCTTGTTATCAATGGATCCTGTGATTGGAGCCATATCAGCGGGTAACGCAGTGGTCCTGAAACCATCAGAAATTGCTCCAGCAACTTCATCAGTACTTCTAAATTTGATTGAAGGTTATCTAGATAACTCTGCAATCAGAGTTGTTGAAGGGGCTATTCCTGAAACAACTGCACTTTTGGAGCAGAAGTGGGACAAGATACTTTACACAGGTAGTGCTAGGGTAGGTCGCATTGTCATGGCTGCTGCCGCAAAGCACCTTACACCTGTAATTCTGGAACTTGGTGGAAAGTGTCCAGCTGTTGTTGATTCAGATGTTAATTTACAAGTTACTGCTAGGAGGATAATAGGTGGAAAGTGGGCATGCAATAGTGGACAAGCATGCATTGGTGTTGATTATATCATCACAAGAAAAGAATTTGCTCCAACACTGATAAATGCTTTGAAAGAAGTGTTGAAGGAATTCTTTGGGGAAGATCTGATGGAATCAAAAGACATGTCTCGTATCGTGTCCCCGACCCAGTTTTCCCGGCTGGTGAAGCTCTTGGATGAGGATAAAGTATCTGACAAAATTGTTTTTGGAGGTCAGAGGGATGAAAAGAAACTAAAGATTGCACCAACTATCTTATTGGATGTTCCAGATGATGCAATGGTAATGCAGGAGGAGATATTTGGGCCAATAATGCCAATCATAACTGTGAGTACTTACTTGTTGACAAGGATAATATATATATTCCTTAAAAACTTGCTTCAACTTTAG 1005 0.405 MLEEKEKEILEALYKDLSKPRLEGFIAEVSQAKSSCSEAIQELKHWMKPEKIKTSFTTFPSSAEIVSEPLGVVLVISTWNFPFLLSMDPVIGAISAGNAVVLKPSEIAPATSSVLLNLIEGYLDNSAIRVVEGAIPETTALLEQKWDKILYTGSARVGRIVMAAAAKHLTPVILELGGKCPAVVDSDVNLQVTARRIIGGKWACNSGQACIGVDYIITRKEFAPTLINALKEVLKEFFGEDLMESKDMSRIVSPTQFSRLVKLLDEDKVSDKIVFGGQRDEKKLKIAPTILLDVPDDAMVMQEEIFGPIMPIITVSTYLLTRIIYIFLKNLLQL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271960g00008 334 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 1 177 IPR016162 GO:0016491
Stsc271960g00008 334 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 203 214 IPR016160 GO:0016491
Stsc271960g00008 334 SUPERFAMILY ALDH-like 2 317 IPR016161 GO:0016491
Stsc271960g00008 334 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 178 324 IPR016163 GO:0016620
Stsc271960g00008 334 Pfam Aldehyde dehydrogenase family 2 317 IPR015590 GO:0016491
Stsc271960g00008 334 PANTHER ALDEHYDE DEHYDROGENASE 1 317 IPR012394 GO:0006081
Stsc271960g00008 334 FunFam Aldehyde dehydrogenase 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271960g00008 Stsc-Chr271960 17912 20378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271960g00008 1 315 Aldehyde Dehydrogenase Gene Family AT4G34240 71.746 1.82e-159 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271960g00008 K00128 - gmx:100800699 541.962