Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271960g00006 ATGAAGAGTGAATTGGAATTACCACCAGGTTTCAGGTTCCACCCCACTGACGAGGAGCTTGTCAATCACTACTTGTGCAGGAAATGTGCTTCACAGTCCATTGCCGTTCCTATCATCAAGGAGATCGATTTGTACAAGTTTGATCCATGGCTCCTTCCAGAGATGGCTCTGTACGGCGAGAAAGAGTGGTATTTCTTCTCTCCAAGGGACCGCAAGTATCCGAACGGTTCACGCCCAAACCGGGCCGCGGGTTCAGGGTACTGGAAGGCCACGGGTGCCGATAAGCCCATTGGAAAGCCCAAGGCCGTGGCCATCAAGAAGGCACTGGTGTTCTACGCTGGGAAAGCCCCCAAAGGAGTGAAAACCAACTGGATCATGCATGAATATCGACTGGCTAACGTTGACAGATCGGCAGGCAAGAAAAATAATAACTTAAGGCTTGATGATTGGGTGCTATGCCGAATTTACAACAAGAAAGGCAAGATTGAGAAATACGATGATAACCTTGGGGCGTTGGATCACAAATCAGTATCGTCGGAGGTGGAGGATATGGAGAGGAAGCCGGAGATGAAGGCGGAGCAATTGCATATGGACACGTCATCGGATTCGGTGGTATCGCCGGATGTGACGTGGGAGAGTAAGGAGGTGCAGAGCGAGCCCAAGTGGAATGACCTCTTTGACCAAGTCTTTGATTTCCAGTTCGCTAATAATTTCATTGATTTCTCATCGCCTGGAGATGACCCTTTTGCCCCTCAGCTTTCTTCTTGGCAGCAGCAGCAACAGGAGGACATGTTCATCACATTTTGA 807 0.4944 MKSELELPPGFRFHPTDEELVNHYLCRKCASQSIAVPIIKEIDLYKFDPWLLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKAVAIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAGKKNNNLRLDDWVLCRIYNKKGKIEKYDDNLGALDHKSVSSEVEDMERKPEMKAEQLHMDTSSDSVVSPDVTWESKEVQSEPKWNDLFDQVFDFQFANNFIDFSSPGDDPFAPQLSSWQQQQQEDMFITF 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271960g00006 268 Gene3D NAC domain 16 163 IPR036093 GO:0003677|GO:0006355
Stsc271960g00006 268 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Stsc271960g00006 268 FunFam NAC transcription factor 16 162 - -
Stsc271960g00006 268 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Stsc271960g00006 268 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
Stsc271960g00006 268 PANTHER NAC TRANSCRIPTION FACTOR 56 7 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271960g00006 Stsc-Chr271960 11736 13154 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271960g00006 1 268 NAC Transcription Factor Family AT5G08790 63.214 4.97e-115 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc271960g00006 NAM 6.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271960g00006 - - gmx:100814504 373.629