Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271960g00005 ATGAAGAGTGAATTGGAATTACCACCAGGTTTCAGGTTCCACCCCACTGACGAGGAGCTTGTCAATCACTACTTGTGCAGGAAATGTGCTTCACAGTCCATTGCCGTTCCTATCATCAAGGAGATCGATTTGTACAAGTTTGATCCATGGCTCCTTCCAGAGATGGCTCTGTACGGCGAGAAAGAGTGGTATTTCTTCTCTCCAAGGGACCGCAAGTATCCGAACGGTTCACGCCCAAACCGGGCCGCGGGTTCAGGGTACTGGAAGGCCACGGGTGCCGATAAGCCCATTGGAAAGCCCAAGGCCGTGGCCATCAAGAAGGCACTGGTGTTCTACGCTGGGAAAGCCCCCAAAGGAGTGAAAACCAACTGGATCATGCATGAATATCGACTGGCTAACGTTGACAGATCGGCAGGCAAGAAAAATAATAACTTAAGGGTACGTCGTGCTCTATGCACCCTAGTTTCAATCTCACAACATCTTTTATATGCTCAAAATCGATTGGGAATGAATAATTGCAGCTTGATGATTGGGTGCTATGCCGAATTTACAACAAGAAAGGCAAGATTGAGAAATACGATGATAACCTTGGGGCGTTGGATCACAAATCAGTATCGTCGGAGGTGGAGGATATGGAGAGGAAGCCGGAGATGA 654 0.4817 MKSELELPPGFRFHPTDEELVNHYLCRKCASQSIAVPIIKEIDLYKFDPWLLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKAVAIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAGKKNNNLRVRRALCTLVSISQHLLYAQNRLGMNNCSLMIGCYAEFTTRKARLRNTMITLGRWITNQYRRRWRIWRGSRR 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271960g00005 217 FunFam NAC transcription factor 16 160 - -
Stsc271960g00005 217 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Stsc271960g00005 217 PANTHER NAC TRANSCRIPTION FACTOR 56 7 143 - -
Stsc271960g00005 217 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Stsc271960g00005 217 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Stsc271960g00005 217 SUPERFAMILY NAC domain 4 136 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271960g00005 Stsc-Chr271960 11736 13154 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271960g00005 1 154 NAC Transcription Factor Family AT5G08790 81.410 9.17e-92 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc271960g00005 NAM 3.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271960g00005 - - tcc:18611951 290.812