Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271960g00004 ATGGCTCTGTACGGCGAGAAAGAGTGGTATTTCTTCTCTCCAAGGGACCGCAAGTATCCGAACGGTTCACGCCCAAACCGGGCCGCGGGTTCAGGGTACTGGAAGGCCACGGGTGCCGATAAGCCCATTGGAAAGCCCAAGGCCGTGGCCATCAAGAAGGCACTGGTGTTCTACGCTGGGAAAGCCCCCAAAGGAGTGAAAACCAACTGGATCATGCATGAATATCGACTGGCTAACGTTGACAGATCGGCAGGCAAGAAAAATAATAACTTAAGGCTTGATGATTGGGTGCTATGCCGAATTTACAACAAGAAAGGCAAGATTGAGAAATACGATGATAACCTTGGGGCGTTGGATCACAAATCAGTATCGTCGGAGGTGGAGGATATGGAGAGGAAGCCGGAGATGAAGGCGGAGCAATTGCATATGGACACGTCATCGGATTCGGTGGTATCGCCGGATGTGACGTGGGAGAGTAAGGAGGTGCAGAGCGAGCCCAAGTGGAATGACCTCTTTGACCAAGTCTTTGATTTCCAGTTCGCTAATAATTTCATTGATTTCTCATCGCCTGGAGATGACCCTTTTGCCCCTCAGCTTTCTTCTTGGCAGCAGCAGCAACAGGAGGACATGTTCATCACATTTTGA 645 0.5023 MALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKAVAIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAGKKNNNLRLDDWVLCRIYNKKGKIEKYDDNLGALDHKSVSSEVEDMERKPEMKAEQLHMDTSSDSVVSPDVTWESKEVQSEPKWNDLFDQVFDFQFANNFIDFSSPGDDPFAPQLSSWQQQQQEDMFITF 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271960g00004 214 Pfam No apical meristem (NAM) protein 5 77 IPR003441 GO:0003677|GO:0006355
Stsc271960g00004 214 SUPERFAMILY NAC domain 3 104 IPR036093 GO:0003677|GO:0006355
Stsc271960g00004 214 ProSiteProfiles NAC domain profile. 1 104 IPR003441 GO:0003677|GO:0006355
Stsc271960g00004 214 PANTHER NAC TRANSCRIPTION FACTOR 56 3 144 - -
Stsc271960g00004 214 Gene3D NAC domain 1 109 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271960g00004 Stsc-Chr271960 11736 13154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271960g00004 1 214 NAC Transcription Factor Family AT5G08790 59.735 5.06e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc271960g00004 NAM 5.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271960g00004 - - gmx:100814504 267.7