Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271959g00014 ATGGAAGCTAGTTTGGAATGCCAAAGTGTTCTTGACGTTCCTGCAACACAAATGGTGCATGAACAACTTTGGGTGGATAAATATGCACCAAAGTCATTTACTGAGCTTCTTAGTGATGAACAAACAAATCGTGAGGTACTCTTGTGGTTAAAACAATGGGACTCTGTTGTTTTTGGATCTGAAATTCGAAGTACATCAGATGATGTTTTGTCTGCTTTGAAGCGACATTCTTCTGTTGCCCATAATCACCGACATTCTTCTGTTGCCCAAAATCAGCGACCTTTCAATTCAAAGTTTTCAAGGATAAACAGAGGAAACAAATGGAGTAGTGGGAGGTATAAAAATTCAAGAAGCATGGATGAGAGTGGTAATTCAAAGGGCAATGAGGATATACTGAATACAAGGACAACCAATGTTGGTCCACCAGAACAGAAGATTCTTCTGCTCTGTGGATCCCCTGGTCTTGGAAAAACAACACTTGCCCATGTAGCTGCCAGGCATTGTGGATATCATGTAGTGGAGGTTAATGCCAGTGATGATCGTTCTGCATCAACAATTGAACCCAAAATCCTTGATGTTGTTCAAATGAACTCTGTCTTGTCTGATTCGAGGCCAAAGTGTCTGGTGGTGGATGAAATTGATGGAGCCCTTGGTGAAGGCAAGGGTGCTGTTGACGTTCTTTTGAAGATGGTTTCTGGTGAAACAAAGTCTGATGCTGGAAGGCAAAGTTTGGGGAAAGATCTGGGAAAGAAATCGTCAAAGAAGGGCCGGAAAACAGCCACATTATTAAGACCTGTAATTTGCATTTGTAATGATTTATATGCACCTGCCTTAAGACCATTACGTCAGATAGCCAAGGTTCATATGTTTGTTCAGCCAACAGTTGGTCGTGTGGTGAGCAGGCTTAAATATATATGTAACAAGGAGGGAATGAAAGCTAGTGCTATTGCGCTCACTGCTCTAGCAGAATACACAGAATGTGATATACGCTCATGCTTGAATACTCTGCAATTTCTCTCAAAGAAAAAGGAAACCCTCAATATGTTTGATTTAGCTTCTCAAGTAGTTGGTCAGAAGGACATGTCAAAGAATGTTATAGACATATGGAAGGAGATTTTCCATAGGAAAAGAAGAAAGTTGGAAAGAAACTCATCTAAAAGCAAGTCTTTTGAATTTGATTCCTTGTACTCATTGATATCAAACCGAGGTGATAGTGACTTGATTCTGGATGGAGTTCATGAAAATATTTTGCATCTCAATTATCATGATCCAGTGATGCAGAAAACTGTCAAGTGCTTCAATGGTCTTGGAGTTTATGATCTATTGCATAAATTCATATGGCGTACACAACAAATGCCCCTTCATGTATATTTGCCGCCCATAGCAATTGGTGTACATCATATAGTAGCTCAAGTTCGGAAGCCAAACATTGAGTGGCCAAAGTCTTATCAAAGGTATCGGACAATGATGTCTGAGAAGATTGATATTTTGAATACTTGGCACTACAAAGTCCCACCACATATTGCAAGGCATCTATCAGCTAGTTGCATTGTTGAGGATATAATTTCTCCATTGTTGCATATTCTGTCTCCGCCAACTATAAGACCGGTGGCATTACATCTCCTATCTGAAAAGGAGAAGAATGATTTTGCTCAACTAGTTAGCACAATGGTCTCTTACTCTATAACATACAAGACTACAAAGTCAGAAATTCTTCCTAATCACCTAAGGCATGAAGTGGCAGATGACGTGGCTCTGTCTCTTGTTCCCCCAATCACTGACTTCATAAACTTTCAGGACTATGTCTCCAATCATCACACCCTTTCATTACCTATGAAGAAGGTTTTGCTCCATGAAGTTGAAAAACAGAGAATCTTGCAAGTCACAAAGGGAGGGGATGAAGTTTTTGCTACCGGAACTATCAGTGCTCAATCAACCAATGCTAACCATGGAGGCGCATGCAGGTTTAAAAAGCCAAGTGTTAAAGGCTTCAAAAGCAATGATGGCTCTCTGCAAAAAGAAGAAACCTTGGAAAAAGACCCATTCCCTTTACTTTTTAAGTTTAATGAGGGCTTTACGAATGCGGTGAAAAGACCTGTCCGGATACGTGAATTTCTATGTTGA 2124 0.4016 MEASLECQSVLDVPATQMVHEQLWVDKYAPKSFTELLSDEQTNREVLLWLKQWDSVVFGSEIRSTSDDVLSALKRHSSVAHNHRHSSVAQNQRPFNSKFSRINRGNKWSSGRYKNSRSMDESGNSKGNEDILNTRTTNVGPPEQKILLLCGSPGLGKTTLAHVAARHCGYHVVEVNASDDRSASTIEPKILDVVQMNSVLSDSRPKCLVVDEIDGALGEGKGAVDVLLKMVSGETKSDAGRQSLGKDLGKKSSKKGRKTATLLRPVICICNDLYAPALRPLRQIAKVHMFVQPTVGRVVSRLKYICNKEGMKASAIALTALAEYTECDIRSCLNTLQFLSKKKETLNMFDLASQVVGQKDMSKNVIDIWKEIFHRKRRKLERNSSKSKSFEFDSLYSLISNRGDSDLILDGVHENILHLNYHDPVMQKTVKCFNGLGVYDLLHKFIWRTQQMPLHVYLPPIAIGVHHIVAQVRKPNIEWPKSYQRYRTMMSEKIDILNTWHYKVPPHIARHLSASCIVEDIISPLLHILSPPTIRPVALHLLSEKEKNDFAQLVSTMVSYSITYKTTKSEILPNHLRHEVADDVALSLVPPITDFINFQDYVSNHHTLSLPMKKVLLHEVEKQRILQVTKGGDEVFATGTISAQSTNANHGGACRFKKPSVKGFKSNDGSLQKEETLEKDPFPLLFKFNEGFTNAVKRPVRIREFLC 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271959g00014 707 CDD HLD_clamp_RFC 293 348 - -
Stsc271959g00014 707 CDD AAA 142 245 - -
Stsc271959g00014 707 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 655 706 - -
Stsc271959g00014 707 FunFam Chromosome transmission fidelity protein 18 293 360 - -
Stsc271959g00014 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 350 IPR027417 -
Stsc271959g00014 707 Pfam ATPase family associated with various cellular activities (AAA) 147 259 IPR003959 GO:0005524|GO:0016887
Stsc271959g00014 707 Gene3D - 293 363 - -
Stsc271959g00014 707 Gene3D - 21 292 IPR027417 -
Stsc271959g00014 707 MobiDBLite consensus disorder prediction 80 137 - -
Stsc271959g00014 707 SMART AAA_5 143 296 IPR003593 GO:0016887
Stsc271959g00014 707 MobiDBLite consensus disorder prediction 83 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271959g00014 Stsc-Chr271959 87152 96932 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271959g00014 144 340 Core DNA Replication Machinery Family AT5G22010 28.302 1.24e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271959g00014 K11269 - gmx:100785041 1050.81