Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271958g00012 ATGGAGAAAGAAGGTATTGGACTTGAAATCACAGAGCTAAGATTGGGTCTTCCCGGTGGTGGTGGGGATTCATCATCAGAGAAGAATAAGAAGAAGAGGGTGTTTTCGGAAATAGAAGATGCCACAGATGACCGGAAAACAGGAGAGAGGAAGAACCAAGTGGTGGGGTGGCCACCGGTGTGCTCTTACCGGAAGAAGAATAGTAGTATTACGTCATCAAAAATGTACGTGAAGGTTAGCATGGACGGTGCTCCATTCCTGCGTAAAATAGATCTTGCCATGCACAAAGGTTACTCTGAATTAGGGTTTGCCTTGGAGGAGCTCTTTGGTTGCCATGGAATGACAGCGGAGAAATGCGAACAAGTTCCGATTTACGAAGACAAAGACGGTGACTGGATGCTCGTCGGAGATGTTCCTTGGCAGATGTTTATTGAATCATGCAAGCGTCTGAGGATTATGAAAAGATCAGATGCAAAGGGCTTCGGTCTTCAACCAAAAGGATCATTAAAGGGATTTATCCAAGGCGTGTGA 531 0.4557 MEKEGIGLEITELRLGLPGGGGDSSSEKNKKKRVFSEIEDATDDRKTGERKNQVVGWPPVCSYRKKNSSITSSKMYVKVSMDGAPFLRKIDLAMHKGYSELGFALEELFGCHGMTAEKCEQVPIYEDKDGDWMLVGDVPWQMFIESCKRLRIMKRSDAKGFGLQPKGSLKGFIQGV 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271958g00012 176 MobiDBLite consensus disorder prediction 25 51 - -
Stsc271958g00012 176 MobiDBLite consensus disorder prediction 1 52 - -
Stsc271958g00012 176 SUPERFAMILY CAD & PB1 domains 67 154 - -
Stsc271958g00012 176 Pfam AUX/IAA family 32 114 IPR033389 -
Stsc271958g00012 176 Pfam AUX/IAA family 119 161 IPR033389 -
Stsc271958g00012 176 Gene3D - 69 166 - -
Stsc271958g00012 176 ProSiteProfiles PB1 domain profile. 74 157 IPR000270 GO:0005515
Stsc271958g00012 176 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 159 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271958g00012 Stsc-Chr271958 75099 76990 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271958g00012 28 159 B3 DNA Binding Superfamily AT1G34390 31.818 1.18e-13 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Stsc271958g00012 AUX_IAA 2.1e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271958g00012 K14484 - gmx:100811879 256.529