Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271958g00011 ATGCTACCACCACCGCACATGGATAGAAGCAATGGCACTACCATGTTTCCTGCATCTGACTTCGACGTTGACTTCAAGCTCAGCCTCTCCCTTCCCGGAACTCAAACAGCAGAGGTGGTGGGGTGGCCGCCGGTGAGGAAGAACAACAGAAAGAGAGGCGTGAAGGTGGGTGTGGATGGAGCGCCATATCTTAGAAAAGTGGATCTTGAAGCGTATGACAGTTATGAGCAGCTCCTCAAGGCATTGGAGACCATGTTTTGCTGCTCAACCATTATTCTTCGTAACGAGAATAAGTTGATGATGGATTATATGGCGACTTATGAGGACAAAGAAGGTGACTGGATGTTACTTGGCGATGTACCTTGGAAGATGTTCGTTGAATCATGCAAGAGAATAAGGCTCATGATAAAGTAG 414 0.4734 MLPPPHMDRSNGTTMFPASDFDVDFKLSLSLPGTQTAEVVGWPPVRKNNRKRGVKVGVDGAPYLRKVDLEAYDSYEQLLKALETMFCCSTIILRNENKLMMDYMATYEDKEGDWMLLGDVPWKMFVESCKRIRLMIK 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271958g00011 137 Gene3D - 46 137 - -
Stsc271958g00011 137 ProSiteProfiles PB1 domain profile. 51 137 IPR000270 GO:0005515
Stsc271958g00011 137 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 32 135 IPR003311 GO:0005634|GO:0006355
Stsc271958g00011 137 Pfam AUX/IAA family 53 135 IPR033389 -
Stsc271958g00011 137 SUPERFAMILY CAD & PB1 domains 52 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271958g00011 Stsc-Chr271958 71371 72008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271958g00011 54 132 B3 DNA Binding Superfamily AT4G23980 35.443 1.60e-08 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc271958g00011 AUX_IAA 1.2e-33 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271958g00011 K14484 - sind:105164666 143.28