Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271958g00010 ATGAAGAGAGAAAACAATGTAACCTTGAAAGTTGGAGACCACCCTGGTCGATTGACTCGTGCTCGAGCCGCTGCGTTTCGTGCATCTGGGCAATTGCCTCCTTCAAAAGGAGTATCACAACAAAATGAGAAGCAGCTTGTAAAAGGCAATCCTAAAAAGAGGGCTGCTCTTCAGGATGTCTCTAACATTTTCTGTGAAACTAAAGGCAGAGGATCTTCCAATGTTACTAAAATTCAGTCTAAGAAAGGCAAGCTGGATAAGGCAGGTCCAATTGGTGCTTCCAAAGTACTTAAAGGGAAGAGTTTGCCTCACCCAGGGCTTAGATCAGAAGATGCTATATGCTCAGATAACTTCGCAGACGATGCACATCTTCGTTTGATTTCTCAAAAGAAAGATGTAGAAATTGCTGTAGCCAAGAGGAGTGGTATTTATGAGCCTCTAAAGCTATCAAGAAGACCTCATCCTAACTACATGGAAAGAGTACAGCAAGATATAACACAAAGCATGCGTGGGATACTAGTTGATTGGCTTGTAGAGGTCTCTGAGGAGTACAAATTGGTCCCGGATACTCTTTACCTCACTGTATATCTCATAGATTGGTTTCTCTCTAAAACTTACATTGAAAGACGGCGACTTCAGTTACTTGGCATAACCTGCATGCTAATTGCCTCGAAATATGAAGAAATTAATGCCCCACGTATTGAAGAATTCTGCTTCATCACAGACAACACATACACAAAAGAGGAGGTACTAAAAATGGAGACTGAAGTGTTGAAGTTCTCTGCATATCAACTATTTGCTCCCACAACGAAGACTTTCCTCAGGAGGTTTCTTCAAGCAGCACAAGCTTCTTACGAGAGCCCAAGCTTGGAGTTGGAGTTCCTGGCCAATTATCTTGCTGAACTAACACTTATGAACTATGGTTTCTTAAATTTCCGTCCTTCTATGATTGCAGCATCTGCTGTATTTCTTGCTAGATGGACTTTAGATCGGTCATGTCATCCATGGAATCCAACTCTTCAACACTATGCCTCTTACAAACCATCAGAGTTGAAAACCACAGTTCTTGCATTACAAGATCTACAGCTGAATAGTAAGGACTTCCCTTTAACTGCCATCCGCACCAAGTACGAGCAAGAGAAGTTCAAATGTGTAGCGGCTTTGTCATCACCTGAATTGCTTGACACACTCTTCTGA 1197 0.4202 MKRENNVTLKVGDHPGRLTRARAAAFRASGQLPPSKGVSQQNEKQLVKGNPKKRAALQDVSNIFCETKGRGSSNVTKIQSKKGKLDKAGPIGASKVLKGKSLPHPGLRSEDAICSDNFADDAHLRLISQKKDVEIAVAKRSGIYEPLKLSRRPHPNYMERVQQDITQSMRGILVDWLVEVSEEYKLVPDTLYLTVYLIDWFLSKTYIERRRLQLLGITCMLIASKYEEINAPRIEEFCFITDNTYTKEEVLKMETEVLKFSAYQLFAPTTKTFLRRFLQAAQASYESPSLELEFLANYLAELTLMNYGFLNFRPSMIAASAVFLARWTLDRSCHPWNPTLQHYASYKPSELKTTVLALQDLQLNSKDFPLTAIRTKYEQEKFKCVAALSSPELLDTLF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271958g00010 398 Pfam Cyclin, N-terminal domain 151 260 IPR006671 -
Stsc271958g00010 398 FunFam Mitotic cyclin 6 153 253 - -
Stsc271958g00010 398 CDD CYCLIN_AtCycA-like_rpt2 268 382 - -
Stsc271958g00010 398 SUPERFAMILY Cyclin-like 149 260 IPR036915 -
Stsc271958g00010 398 SMART Cyclin_C_2 268 391 IPR004367 -
Stsc271958g00010 398 SUPERFAMILY Cyclin-like 268 393 IPR036915 -
Stsc271958g00010 398 SMART cyclin_7 272 360 IPR013763 -
Stsc271958g00010 398 SMART cyclin_7 175 259 IPR013763 -
Stsc271958g00010 398 MobiDBLite consensus disorder prediction 28 52 - -
Stsc271958g00010 398 PANTHER CYCLINS 111 379 IPR039361 -
Stsc271958g00010 398 PIRSF Cyclin_A_B_D_E 107 397 IPR046965 GO:0016538|GO:0044772
Stsc271958g00010 398 PIRSF Cyclin_A_B_D_E 16 104 IPR046965 GO:0016538|GO:0044772
Stsc271958g00010 398 Gene3D - 150 387 - -
Stsc271958g00010 398 Pfam Cyclin, C-terminal domain 268 390 IPR004367 -
Stsc271958g00010 398 FunFam Cyclin A1 255 387 - -
Stsc271958g00010 398 Gene3D - 153 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271958g00010 Stsc-Chr271958 66081 69039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271958g00010 1 398 Core Cell Cycle Gene Families AT1G80370 50.647 1.50e-138 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271958g00010 K06627 - gmx:100793657 509.605