Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271957g00011 ATGAAGGAAGAAGTTCCACAAAAATTGAGCAGTTCACTAAGCCAGACAGACCGCGGAAGATGCAAGGAAGAAGACTCTGGACTTGATCAAGTAGTGATTATTAGTGTGGTTACATGTGGATCACTATTGATTACTTTGGCCATTGGAGTTATTTTTGTTTGCCGTTATAGACATAAACTAATTCCATGGGAAGGATTTGCTGGAAAGAGCTACCCAATGGCAAGAAACTTAATTTTCTCTTTGCCAAGCAAAGATGACTTCTTCATGAAGTCTGTGTCAATTCAAGCATTCACTTTGGAATATATAGAGGAGGCAACAGAGAAGTACAAGACTTTGATAGGTGAGGGAGGGTTTGGCCCCGTTTACAGGGGCACACTAGACGATGTTCAAGAAGTGGCAGTGAAAGTCCGGTCAGCCACGTCAACTCAGGGAACTCGAGAATTTGATAACGAGCTAAACCTACTCTCTGCAATACAGCATGAGAACCTTGTGCCTCTTATTGGTTACTGCAATGAAAAGGATCAACAGATTCTCGTGTACCCTTTTATGTCCAACGGCTCTTTGCAAAACAGACTATATGGGGAACCAGCAAAGAGAAAAATATTAGACTGGCCAACTAGACTCTCTATCGCACTTGGTGCAGCTCGAGGGTTGGCATATCTTCACACATTTCCCGGACGGCCTGTAATACACAGGGACATAAAATCCAGCAATATACTCCTGGATCATAGCATGTGTGCCAAGGTTGCAGATTTTGGGTTCTCAAAATATGCCCCACAGGAAGGAGACAGTAATGTTTCGCTTGAAGTAAGAGGAACGGCAGGCTATCTGGATCCAGAGTACTATACAACCCAACAGCTATCTGAAAAGAGTGATGTCTTTAGCTTTGGTGTGGTTCTACTTGAAATCGTGACTGGTCGAGAACCTCTCGACATAAAGAGGCCACGAAACGAGTGGAGCTTGGTTGAATGGGCTAAGCCATATATAAGAGCATCAAAGATAGACGAAATTGTGGATCCTGGAATCAAGGGAGGATACCATGCTGAAGCAATGTGGAGAGTGGTGGAAGTGGCACTGCAATGTATCGAACCATTCTCAGCATACAGACCATGCATGGATGACATTGTCCGCGAGTTGGAGGATGCTCTGANNNNNNNNNNTATAGAAAACAATGCATCGGAATACATGAAGTCCATAGAAAGCCTTGGAGGATCAAACCGCTACTCTTTTGTCATGGATAAGAGGGTTCTGCCCTCTACTTCATCTGCTGCAGAATCTACCATGACATCACAAACCTTGCCCCTCCCACAACCAAGATAG 1320 0.4386 MKEEVPQKLSSSLSQTDRGRCKEEDSGLDQVVIISVVTCGSLLITLAIGVIFVCRYRHKLIPWEGFAGKSYPMARNLIFSLPSKDDFFMKSVSIQAFTLEYIEEATEKYKTLIGEGGFGPVYRGTLDDVQEVAVKVRSATSTQGTREFDNELNLLSAIQHENLVPLIGYCNEKDQQILVYPFMSNGSLQNRLYGEPAKRKILDWPTRLSIALGAARGLAYLHTFPGRPVIHRDIKSSNILLDHSMCAKVADFGFSKYAPQEGDSNVSLEVRGTAGYLDPEYYTTQQLSEKSDVFSFGVVLLEIVTGREPLDIKRPRNEWSLVEWAKPYIRASKIDEIVDPGIKGGYHAEAMWRVVEVALQCIEPFSAYRPCMDDIVRELEDALXXXXIENNASEYMKSIESLGGSNRYSFVMDKRVLPSTSSAAESTMTSQTLPLPQPR 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271957g00011 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Stsc271957g00011 439 SMART serkin_6 107 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271957g00011 439 CDD STKc_IRAK 113 380 - -
Stsc271957g00011 439 ProSiteProfiles Protein kinase domain profile. 107 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc271957g00011 439 Gene3D Transferase(Phosphotransferase) domain 1 183 396 - -
Stsc271957g00011 439 SUPERFAMILY Protein kinase-like (PK-like) 87 379 IPR011009 -
Stsc271957g00011 439 Gene3D Phosphorylase Kinase; domain 1 79 182 - -
Stsc271957g00011 439 Pfam Protein tyrosine and serine/threonine kinase 110 379 IPR001245 GO:0004672|GO:0006468
Stsc271957g00011 439 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 13 428 - -
Stsc271957g00011 439 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 183 402 - -
Stsc271957g00011 439 FunFam Nodulation receptor kinase 76 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271957g00011 Stsc-Chr271957 72555 76013 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271957g00011 57 418 Receptor kinase-like Gene Family AT2G28970 41.436 3.57e-87 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc271957g00011 PK_Tyr_Ser-Thr 4.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271957g00011 - - gmx:100781986 724.931