Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271957g00010 ATGGCTCCACCGCCACCGAACGGCTATCGTCAAGAAACGGTGATTGACATAAAGAATAGCAATAAGACCACTCGCCAAACAGTGGGCTTCACTGGCGGTCTTGAGTTTTTCAACCTCACCTACACCGTGACCAAGAAGTTGCAGGTGGACGGAAAGTGGTCCAGTGAAGACGTGGACTTGCTCCACGACATCACTGGGTACGCACCGAAGGGCAGCATCACGGCGGTGATGGGGCCCAGCGGTGCGGGAAAGTCGACGTTCTTGGACGGTCTTGCTGGGAGGATAAAGAGTGGGAGCCTGAAAGGAAGGGTTTCGTTGGATGGTGCAACTGTGAGTGCAAGCTTGATAAAGAGAACTTCTGCATATATCATGCAGGAGGACAGGCTTTTTCCTATGCTCACTGTTTATGAGACGTTGATGTTTGCTGCTGATTTCCGATTGGGAGATCTCTCGCTAGCTGATAAGAGGCAGAGAGTGGAGAAGTTGATAGAGCAACTTGGCTTATCGACATCAAGGAACACGTACATAGGAGACGAAGGAACAAGAGGAGTTTCAGGGGGAGAGCGGCGGAGGGTGTCAATAGGGGTGGACATCATCCACGGACCATCCCTTCTGTTCCTGGACGAGCCAACCTCAGGCCTAGACTCCACTAGCGCACACAGTGTCATCGAAAAGGTCCACCACATCGCTCGCAGCGGCAGCACCGTCATCCTCACCATCCACCAACCCTCTTCTAGAATCCAACTCCTCCTCGACCATCTCATCATCCTCGCCCGCGGCCAGCTCATGTTCCAAGGCTCCCCTAACGACGTCACACACCATTTGTCTCGCATGTCCCGCAAGATACCAAAGGGTGAGAACCCTATCGAGCATCTCATCGACGTCATCCAAGAATACGATCAATGTGAGGTTGGAGTGGAGGCGCTTGCTGAGTTTGCACGCACTGGATCGAAGCCCCCTCCATTGAAGGAGGGTATGTCGATTGTTGAGGCATCACCGTCTCCGGTGAGGGTGCCGCATCGAGGTGGAGGGCGGCAAGGGCGTGGCTACGAGGAGAAGTCGTTGGAGATGTCCCGGACGTCGCAAGTGAGTAGGAGAGTTGCGGATGAGTATGATCACAGTTTGAGGAGTCCTTACAACAACAATTCGCAGTCTTGGAGCACCAGCCACAGCGCTATGTTTCTCAAGTTCACTCCTTCACGCCTCAGGAATGAGTCCAAGCCACACAAGAATAATCCCGCAGGACATAGTTCTCCTGGGTACTACGCATACTCGAGCGAGATTCTGGCTGCGACACCAACCCCTCACAGCAGTGACTACACGGTGAACGAGAACGACTACCTCACACCAACAACTGCCGTAGCTTCGCCGGAGCACCTGGCTCCGAAATTCGCCAACTCCTTCTTCTCGGAAACATGGATCCTCATGCGGCGCAACTTCATCAACATCCGAAGAACACCAGAGCTGTTCCTGTCTCGCCTCATGGTGCTCACCATCATGGGCTTCATGATGGCCACAATGTTCCACAACCCCAAAGAGAATCTCCAGGGAATCACCAACCGCCTCAGCTTCTTCATCTTCACCGTCTGCCTCTTCTTCTTCTCCTCAAACGACGCCGTCCCTGCCTTCATCCAAGAACGCTTCATCTTCATCAGAGAAACCTCCCACAACGCCTACAGAGCCTCTTCCTACACCATTGCAGGCTTAATCACTCACATGCCGTTCCTTCTCCTCCAAGCTTCCGCTTACGCCGCCATTGTTTGGTTTGCCCTAACCCTAAGAGGCCCCTTCTACTACTTCCTCATCGTCCTCTTCGTCTCGCTTCTCTCGACAAACTCCTTCGTGGTGTTCGTGAGCTCCGTGGTTCCCAACTATATACTAGGGTACGCCGCTGTGATTGCTTTCACTGCGTTGTTCTTCTTGTTTTGCGGATACTTCTTGAGCAGCCATGATATACCGATTTATTGGCGGTGGATGAACAAGGTTTCGACGATGACATACCCTTACGAAGGGCTACTCATGAATGAGTATCAGACAGATATCACTTTTGCGGTGAATCAAGGCGTGAACATAACCGGTGTTGGAATCTTGAATAGTCTTCACATTGGGACTCAGGAGTCTAAGAAGTGGGAGAATGTGGGAATCATGTTGGGTTGGGCTGTGTTCTATAGGATCTTGTTTTACTTGGTGCTTCGATTTGGATCCAAGAACCAGAGATCCTAG 2223 0.5205 MAPPPPNGYRQETVIDIKNSNKTTRQTVGFTGGLEFFNLTYTVTKKLQVDGKWSSEDVDLLHDITGYAPKGSITAVMGPSGAGKSTFLDGLAGRIKSGSLKGRVSLDGATVSASLIKRTSAYIMQEDRLFPMLTVYETLMFAADFRLGDLSLADKRQRVEKLIEQLGLSTSRNTYIGDEGTRGVSGGERRRVSIGVDIIHGPSLLFLDEPTSGLDSTSAHSVIEKVHHIARSGSTVILTIHQPSSRIQLLLDHLIILARGQLMFQGSPNDVTHHLSRMSRKIPKGENPIEHLIDVIQEYDQCEVGVEALAEFARTGSKPPPLKEGMSIVEASPSPVRVPHRGGGRQGRGYEEKSLEMSRTSQVSRRVADEYDHSLRSPYNNNSQSWSTSHSAMFLKFTPSRLRNESKPHKNNPAGHSSPGYYAYSSEILAATPTPHSSDYTVNENDYLTPTTAVASPEHLAPKFANSFFSETWILMRRNFINIRRTPELFLSRLMVLTIMGFMMATMFHNPKENLQGITNRLSFFIFTVCLFFFSSNDAVPAFIQERFIFIRETSHNAYRASSYTIAGLITHMPFLLLQASAYAAIVWFALTLRGPFYYFLIVLFVSLLSTNSFVVFVSSVVPNYILGYAAVIAFTALFFLFCGYFLSSHDIPIYWRWMNKVSTMTYPYEGLLMNEYQTDITFAVNQGVNITGVGILNSLHIGTQESKKWENVGIMLGWAVFYRILFYLVLRFGSKNQRS 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271957g00010 740 CDD ABCG_EPDR 34 266 - -
Stsc271957g00010 740 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 24 728 - -
Stsc271957g00010 740 MobiDBLite consensus disorder prediction 344 366 - -
Stsc271957g00010 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 278 IPR027417 -
Stsc271957g00010 740 ProSitePatterns ABC transporters family signature. 184 198 IPR017871 GO:0005524|GO:0016887
Stsc271957g00010 740 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 34 284 IPR003439 GO:0005524
Stsc271957g00010 740 SMART AAA_5 70 268 IPR003593 GO:0016887
Stsc271957g00010 740 Pfam ABC transporter 61 212 IPR003439 GO:0005524
Stsc271957g00010 740 MobiDBLite consensus disorder prediction 333 366 - -
Stsc271957g00010 740 FunFam ABC transporter G family member 6 44 282 - -
Stsc271957g00010 740 Pfam ABC-2 type transporter 472 677 IPR013525 GO:0016020|GO:0140359
Stsc271957g00010 740 Gene3D - 43 283 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271957g00010 Stsc-Chr271957 59910 63878 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271957g00010 33 298 Calmodulin-binding Proteins AT2G36910 27.037 4.29e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271957g00010 K05681 - gmx:100804809 1082.4