Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271957g00004 ATGGAGCTTTCTCAACTTGGCTTTCTTGAGGAACTACTACTTCCTCCAAGGAGAGTAGTAGGAGACTCATGTTGGAATGCTTTCAATGATGATCTGCTCCCTACTACTACTGCTTCTTGGAGCTTTGACTCTCTTGATCTTCATGATAACCCTTCTTTCAATCCCTCATTAGCTTCATTCTCCACACCATTAGACCACAGATTTGACTCATCATCTTATGCTGCTTCATTTCCATTCCTTGATGGCTTCACAATGCCAACAGACCTTCATCACTCACCACCACTTTTCCCACAACAACAAGACAACCACAACCACAACCACCCTCTGGTGGAAGAAGAAGAAGAACAAGAACAAGAGCTTGGACTTCCTGTTAGTGATAACAATCTGAGCAGCTTGGAAGAGAGGAACAGTGGTAGATGCAAACTTGAGGAGCAACAAGCTCTTGAGGTCCCTGATGTTGTGTTCAACATGGGAATTTGTGGAGACAAAAAGGTAGCAAAGTCATCAAAGAAACTTGAAGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGGAGAAGAAGAAAGCGTTTGAATGATCGTCTTTCAATGCTCAGGTCTATTGTCCCCAAGATAAGCAAGATGGACAGGACCTCCATTCTAGGAGATACCATAGATTACATGAAAGAGCTTCTAGAGAGGATTGCTAAGTTGCAAGAAGAAACAATAATGGAAGAGGAGGGAAAGAATCAGATACACCTCTTGGGAATTTCGAAAGAGCTAAAGCCAAATGAAGTAATGTTCAGAAATTCCCCTAAGTTTGATGTTGAGAGGAGGGACCATGACACAAGGATCAGCATCTGCTGTTCTACAAAGCCAGGGTTGTTGCTGTCAACAGTGAACACCTTAGAAGCATTAGGCCTTGAAATTCACCAATGTGTCATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGAGGGTGCTGAGCAAAGAAACTGTATTAGCACAGAAGATGTAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGAAGATGTGTCTAA 1050 0.4257 MELSQLGFLEELLLPPRRVVGDSCWNAFNDDLLPTTTASWSFDSLDLHDNPSFNPSLASFSTPLDHRFDSSSYAASFPFLDGFTMPTDLHHSPPLFPQQQDNHNHNHPLVEEEEEQEQELGLPVSDNNLSSLEERNSGRCKLEEQQALEVPDVVFNMGICGDKKVAKSSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIAKLQEETIMEEEGKNQIHLLGISKELKPNEVMFRNSPKFDVERRDHDTRISICCSTKPGLLLSTVNTLEALGLEIHQCVISSFNDFSMQASCSEGAEQRNCISTEDVKQALFRNAGYGGRCV 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271957g00004 349 Gene3D - 169 235 IPR036638 GO:0046983
Stsc271957g00004 349 CDD ACT_UUR-ACR-like 275 316 - -
Stsc271957g00004 349 SMART finulus 180 229 IPR011598 GO:0046983
Stsc271957g00004 349 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 92 343 - -
Stsc271957g00004 349 Coils Coil 213 233 - -
Stsc271957g00004 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 223 IPR011598 GO:0046983
Stsc271957g00004 349 Pfam Helix-loop-helix DNA-binding domain 180 223 IPR011598 GO:0046983
Stsc271957g00004 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 236 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271957g00004 Stsc-Chr271957 8971 10965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271957g00004 61 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 50.859 1.43e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc271957g00004 HLH 7.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271957g00004 - - gmx:100806571 400.979