Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271956g00021 ATGAAGGCGGTTGAGATTTCTCAAGTCGCTGCTGAGCAGCTTGTTCTTGAACTCAGCAACCCCGATCTCCGAGAAAATGCTCTTCTCGAACTCTCCAAGAAGAGAGAGATGTATCAAGATCTCGCTCTGTTGCTGTGGAATTCCTTTGGAACCGTTGCTGCACTGTTACAGGAAATAGTTTCCATTTATCCTGTTCTTTCGCCACCAAATCTCACTCCAGCACAATCGAATCGAGTGTGCAATGCTCTTGCTCTTCTTCAGTGTGTGGCATCTCACCCTGATACAAGGATGCTATTCCTCAATGCTCATATACCTCTATATTTGTATCCTTTCCTGAATACAACAAGCAAGTCAAGGCCATTCGAATATTTGAGGCTTACCAGCCTTGGTGTGATTGGTGCTTTAGTGAAGGTTGATGATACTGAGGTCATAAGTTTCCTGCTTTCAACTGAAATAATCCCATTGTGCCTGCGCACTATGGAACTGGGCAGTGAATTGTCGAAAACAGTTGCTACTTTCATTGTTCAGAAAATTCTGTTGGATGATGTGGGTTTGGACTATGTTTGTACTACAGCAGAACGCTTTTTTGCTGTAGGCCGAGTTCTGGGAAACATGGTGGCAGCACTTGCTGAGCAACCTTCATCTCGCCTTCTGAAGCACATTATCCGTTGCTATCTTCGCCTTTCTGACAATCGCAGCAGGGCATGTGATGCACTAAGAAGCTGTCTCCCGGAGATGTTAAGAGATGCTACTTTTAATAACTGTCTCCGGGATGACCAAACAACTAAGAGGTGGCTGCAGCAGTTGCTTGTCAATGTTGGAGTGAATAGGGTTCCTTCAATGCAAGCCGGAGGCGGATTCGATCATAACATGATGGTGTCCTGA 885 0.4531 MKAVEISQVAAEQLVLELSNPDLRENALLELSKKREMYQDLALLLWNSFGTVAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMELGSELSKTVATFIVQKILLDDVGLDYVCTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNRSRACDALRSCLPEMLRDATFNNCLRDDQTTKRWLQQLLVNVGVNRVPSMQAGGGFDHNMMVS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271956g00021 294 PANTHER UNCHARACTERIZED 8 276 IPR007216 GO:0006402|GO:0030014
Stsc271956g00021 294 Gene3D - 4 274 IPR011989 -
Stsc271956g00021 294 FunFam Cell differentiation protein RCD1 7 276 - -
Stsc271956g00021 294 SUPERFAMILY ARM repeat 16 241 IPR016024 -
Stsc271956g00021 294 Pfam Cell differentiation family, Rcd1-like 14 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271956g00021 Stsc-Chr271956 111768 115264 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Stsc271956g00021 Rcd1 1.5e-127 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271956g00021 K12606 - gmx:100784529 518.85