Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271956g00008 ATGGGAAGAGGCAGAGGAGCTGCGGCTCTGAAACCTGCGGCGGCGGTTGCGGCGGCGGAGATAAACGGATCAGGGCCGTTGCCGGTATTGAAGGAAGTTAGATACCGTGGTGTGAGGAAGAGACCATGGGGAAGATTCGCCGCCGAAATCAGAGACCCATTGAAGAAAGCTAGGGTTTGGCTCGGAACCTTCGATTCCGCCGAGGAAGCTGCACGCGCCTACGACGCCGCCGCAAGAACCCTCCGTGGACCAAAAGCCAAGACCAATTTTCCTCTCTCTTCTTCTCCTTTTTGCTACCAGAATAATCCCCATAGCGCCGTCGTGGATCCGTACTATTACGCCGCCGTGAACGGCGGCGCTCACGGCGGCGGGTTTCAGGAGAGTCCGGTGAACCCTCAGAGGCCGACGTGCAGTGGAATGAGCAGCACGGTGGAATCGTTCAGTGGACCGAGGAATATGACAGCGCCGCCGTGTACGGTGGCTCCGGCGACGGCGACGGTGGCGAAGAGGTACCCTAGGACTCCGCCGGTTGTTCCAGAAGATTGCCATAGTGATTGTGATTCTTCGTCGTCGGTGGTTGACGACGGCGATAATATTGTTTCGTCGTCGTTTAGAGCGCCGTTGCCGTTTGATCTCAACGCGCCGCCGTTGGAGGGTGGCGATGATGATGAGCTCCGATGCACCGCTTTGTGCCTTTGA 699 0.5823 MGRGRGAAALKPAAAVAAAEINGSGPLPVLKEVRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEEAARAYDAAARTLRGPKAKTNFPLSSSPFCYQNNPHSAVVDPYYYAAVNGGAHGGGFQESPVNPQRPTCSGMSSTVESFSGPRNMTAPPCTVAPATATVAKRYPRTPPVVPEDCHSDCDSSSSVVDDGDNIVSSSFRAPLPFDLNAPPLEGGDDDELRCTALCL 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271956g00008 232 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Stsc271956g00008 232 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Stsc271956g00008 232 Gene3D AP2/ERF domain 33 93 IPR036955 GO:0003700|GO:0006355
Stsc271956g00008 232 SUPERFAMILY DNA-binding domain 34 93 IPR016177 GO:0003677
Stsc271956g00008 232 CDD AP2 34 93 IPR001471 GO:0003700|GO:0006355
Stsc271956g00008 232 MobiDBLite consensus disorder prediction 131 150 - -
Stsc271956g00008 232 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Stsc271956g00008 232 Pfam AP2 domain 34 83 IPR001471 GO:0003700|GO:0006355
Stsc271956g00008 232 FunFam Ethylene-responsive transcription factor 2 33 92 - -
Stsc271956g00008 232 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Stsc271956g00008 232 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 24 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271956g00008 Stsc-Chr271956 36479 37177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271956g00008 1 232 AP2-EREBP Transcription Factor Family AT1G50640 59.592 1.43e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc271956g00008 AP2 5.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271956g00008 K09286 - gmx:100820249 247.284