Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271956g00001 ATGCAAGAAGCACAAATTGTTCAAGCTGTGGCAGCTAGTGTATATGGTGACAACACTACCTTCTATAAATGTGGTTTCATTGGTTACCAAGACACCTTGTTTGATTCAATTGGAAGACATTATTACCACGACTGTTACATTCAAGGTGAAGTCGATTTCATTTTTGGTTATGCCCGCTCATTTTATCAGAAATGCACGATAAATGCAACAGGGAGGGACAATCTTCCAGGGTATGTAACAGCACATGGACGAGGACAACCAGAAGGTGATCCTAATGGTGGATTTGTATTTAACAGATGTGCAATAACTGGAACTGGAAAAGTGAATTTGGGAAGAGCATGGGGTCCTGAGGCTAGAGTTATTTTTCAGAATACATATTTTGGGGAATTAATAACCCCTCAAGGATGGGATGCTTGGAACGGCCAAGGACATGAGGATAAGCTCACATTTGCAGAAGTGAATTGTACAGGACCAGGAAGCAATACTAATGATCGAGTTCCATGGGAGAAAAAATTAAGCATATCAGAGACAAATGAATATTCTTATTCATCTTTTATCAATTATGATGGATGGCTTGATAATTTACCCGTCACTCATTAG 600 0.3933 MQEAQIVQAVAASVYGDNTTFYKCGFIGYQDTLFDSIGRHYYHDCYIQGEVDFIFGYARSFYQKCTINATGRDNLPGYVTAHGRGQPEGDPNGGFVFNRCAITGTGKVNLGRAWGPEARVIFQNTYFGELITPQGWDAWNGQGHEDKLTFAEVNCTGPGSNTNDRVPWEKKLSISETNEYSYSSFINYDGWLDNLPVTH 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271956g00001 199 SUPERFAMILY Pectin lyase-like 8 196 IPR011050 -
Stsc271956g00001 199 Gene3D - 2 199 IPR012334 -
Stsc271956g00001 199 Pfam Pectinesterase 7 187 IPR000070 GO:0030599|GO:0042545
Stsc271956g00001 199 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 7 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271956g00001 Stsc-Chr271956 3947 5564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271956g00001 8 192 Carbohydrate Esterase AT1G05310 45.026 1.26e-51 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271956g00001 - - tpra:123922273 244.588