Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271955g00008 ATGGGAAGGCCTCCATGCTGTGACAAAGTTGGAATCAAGAAAGGTCCATGGACACCTGAAGAAGATATCATCCTTGTATCTTACATCCAAGAACATGGTCCTGGAAATTGGAGATCAGTCCCTACTAACACTGGGTTATCAAGATGCAGCAAAAGTTGTAGGCTAAGATGGACAAATTATCTAAGGCCAGGAATCAAGAGAGGAAACTTCACTCCCCATGAAGAAGGAATGATTATTCACTTGCAAGCTCTTCTTGGTAACAAATGGGCAGCCATAGCTTCATACCTTCCACAAAGAACAGACAATGATATAAAGAATTACTGGAACACACATCTAAAGAAGAAGCTCAAGAAATTCCAACAACAAGCAGCAGCTTCCATGGATTCTTCTTCTCACAACCACCACCTCCAACCATCTTCAGACTATCTACCATCGTCTAAGAGCTTCAGTGACAGAACAATTTCATCATCAGATCATATCAATAACAGCGATAACAACAATAGGTCTCGGTCTCAGTCCCAGTCCCAATCTTCGTCGATCACCACGTATGCTTCGAGCACTGAGAACATCTCAAGGCTCTTAGAAGGTTGGATGAGAACTTCTCCAAAACCATCTTCTTCATCATCACCATCTCCATTCATCATCAAAGGATCATCAAATCATGAAGAAAACAACAACAACAATGATAATGATGATGATGGTAAGGAGGTACTGCTTGTTAAGTCTGTGTCTATGCCTGCTTTGAATCTTGAGCTTCATCATCATCAGAACAATATTGAGGAGAATAATAGTGATCCAATCAAGTTATCCAGATATGATAATCATCATCATAATGTGTCTCATGAAGAGTTTGAATCTATTCTTTCCTTTGAGAATCTCAACGCTGGCTCTTGCTGGGACAAATCTACATGTGATTCCATGCCTAATAATAATCATCACAAGTGTTCTTCATCAGAAGCTGCTGCAGCTGCTACTGCTTTTTCTCAACAGAATCATCATCATGAAATTGAGGAGGAAGAAGAAGAAGATGATGAGGATAATGAAGAGGAGAAGAAGAAGAAGAATGATAGGGATAATAAGAATAATAATAATAATGAGAATCCTCCTCCATTGTCATTCCTTGAGAAGTGGCTATTGGATGAGAATGTTGGTCATGGTGATGAAGAGATCATGGAGTTATCTCCTATGTTCTAA 1194 0.3953 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQQQAAASMDSSSHNHHLQPSSDYLPSSKSFSDRTISSSDHINNSDNNNRSRSQSQSQSSSITTYASSTENISRLLEGWMRTSPKPSSSSSPSPFIIKGSSNHEENNNNNDNDDDGKEVLLVKSVSMPALNLELHHHQNNIEENNSDPIKLSRYDNHHHNVSHEEFESILSFENLNAGSCWDKSTCDSMPNNNHHKCSSSEAAAAATAFSQQNHHHEIEEEEEEDDEDNEEEKKKKNDRDNKNNNNNENPPPLSFLEKWLLDENVGHGDEEIMELSPMF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271955g00008 397 MobiDBLite consensus disorder prediction 198 234 - -
Stsc271955g00008 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Stsc271955g00008 397 MobiDBLite consensus disorder prediction 122 185 - -
Stsc271955g00008 397 MobiDBLite consensus disorder prediction 119 185 - -
Stsc271955g00008 397 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Stsc271955g00008 397 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc271955g00008 397 CDD SANT 16 61 IPR001005 -
Stsc271955g00008 397 MobiDBLite consensus disorder prediction 198 224 - -
Stsc271955g00008 397 FunFam Transcription factor MYB60 68 140 - -
Stsc271955g00008 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Stsc271955g00008 397 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc271955g00008 397 Gene3D - 13 66 - -
Stsc271955g00008 397 MobiDBLite consensus disorder prediction 310 330 - -
Stsc271955g00008 397 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 231 - -
Stsc271955g00008 397 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc271955g00008 397 SMART sant 66 114 IPR001005 -
Stsc271955g00008 397 SMART sant 13 63 IPR001005 -
Stsc271955g00008 397 Coils Coil 333 356 - -
Stsc271955g00008 397 CDD SANT 69 111 IPR001005 -
Stsc271955g00008 397 FunFam MYB-related transcription factor 13 66 - -
Stsc271955g00008 397 Gene3D - 68 140 - -
Stsc271955g00008 397 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc271955g00008 397 MobiDBLite consensus disorder prediction 310 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271955g00008 Stsc-Chr271955 58491 59995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271955g00008 1 119 MYB Transcription Factor Family AT5G62470 89.916 1.11e-80 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc271955g00008 Myb_DNA-binding 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271955g00008 K09422 - gmx:100817854 386.341