Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271954g00013 ATGGCAATGACAAACGGAAACAGCGACGGTTTCAAACTAAGCGTGAAGCTAACAAGTGAACCAAGTGTAGTGGCACCAGCAGAAGAAACAAAGAAAGGAATGTACTTTCTGTCAAACCTTGACCAGAACATTGCAGTGATTGTGAGAACAGTATACTGCTTCAAAAGCAAAGAGAGGGGGAACGAGAATGCTGCAGAAGAGATCAAGAAGGCGTTGAAGAAGGTGCTTGTCCACTATTACCCTCTTGCTGGGAGGCTCAGTTTAAGTCCTGAGGGGAAGCTTATAGTGGACTGCACTGGTGAGGGTGCACTGTATGTGGAGGCTGAAGCAAACTGTGAANNNNNNNNNNTGGAACAGCTTGGTGATATTACAAAGCCAGACCCTGCCACTCTTGGTATGCTGGTTTATAACATTCCTGATGCAAAGCACATACTTCAGATGCCTCCTTTGGTTGCTCAGGTGACTAAGTTCAAGTGTGGAGGATTTTCTCTGGGACTGTGCATGAACCACTGCATGTTTGATGGAATAGGAGCCATGGAGTTTGTGAACTCATGGGGAGAAGTAGCAAGAGGCCTTCCACTCTCAATTCCACCATACCTAGACAGAAGCATTCTCAAGGCAAGGGTCCCACCAAAGATAGAGTTTGTACACAAAGAATTCGCTGACATTGAAGACAAGTCAAACACAACCACCTTGTATGAGGATGAAAATATGGTTTACAGGTCCTTCTGCTTTGACCCTGAGAAGCTCAAGAGCCTCAAGGCTAAGGCCATGGAAGATGGGGTTCTTGATTCTTGCACAACATTTGAAGTTCTCTCAGCTTTTGTGTGGATTGCAAGAACCAAGGCTCTGAAGATGTTGCCTGAACAAGAGACTAAGCTTCTCTTTGCTGTTGATGGCAGGGCCAAGTTTAATCCTCCCCTTCCTAAAGGGTATTTTGGGAATGGCATTGTCCTCACTAATTCTGTCTGCCAAGCAGGTGAACTTACAGAAAAGCCCTTCTCATATGCTGTGAGTCAAATTCAAAATGCAATAAAGATGGTGACAGACAGTTACATGAGATCAGCCATTGATTATTTTGAAGTGACAAGGGCAAGGCCATCACTGGCATGCACTCTCTTGATCACAACATGGTCAAGGTTGTCATTTCACACCACTGATTTTGGTTGGGGTGAGCCTGTTCTCTCAGGCCCTGTCTCATTGCCTGAGAAAGAAGTCATCTTGTTCCTCTCTCATGGCTTTGAGAGGAGAAACATCAATGTCCTTCTTGGTTTGCCTGCTCCTGTCATGAAGATCTTCCATGACTTGATGATGCAGATTTAA 1323 0.4475 MAMTNGNSDGFKLSVKLTSEPSVVAPAEETKKGMYFLSNLDQNIAVIVRTVYCFKSKERGNENAAEEIKKALKKVLVHYYPLAGRLSLSPEGKLIVDCTGEGALYVEAEANCEXXXXEQLGDITKPDPATLGMLVYNIPDAKHILQMPPLVAQVTKFKCGGFSLGLCMNHCMFDGIGAMEFVNSWGEVARGLPLSIPPYLDRSILKARVPPKIEFVHKEFADIEDKSNTTTLYEDENMVYRSFCFDPEKLKSLKAKAMEDGVLDSCTTFEVLSAFVWIARTKALKMLPEQETKLLFAVDGRAKFNPPLPKGYFGNGIVLTNSVCQAGELTEKPFSYAVSQIQNAIKMVTDSYMRSAIDYFEVTRARPSLACTLLITTWSRLSFHTTDFGWGEPVLSGPVSLPEKEVILFLSHGFERRNINVLLGLPAPVMKIFHDLMMQI 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271954g00013 440 Pfam Transferase family 20 435 - -
Stsc271954g00013 440 Gene3D - 221 440 IPR023213 -
Stsc271954g00013 440 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 23 427 - -
Stsc271954g00013 440 FunFam Spermidine hydroxycinnamoyl transferase 14 220 - -
Stsc271954g00013 440 FunFam Tryptamine hydroxycinnamoyl transferase 224 438 - -
Stsc271954g00013 440 Gene3D - 11 220 IPR023213 -
Stsc271954g00013 440 Coils Coil 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271954g00013 Stsc-Chr271954 92525 95912 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271954g00013 20 440 Monolignol Biosynthesis Gene Families AT5G48930 35.550 5.67e-84 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271954g00013 K15400 - gmx:100792433 745.732