Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271954g00002 ATGATCAATTCACTATGTGGAAGCTCAGTGTCTCTGAAAAGTGAGAATTCAAGCACAAAGCTACAACCCACTTCTTCAAATGACTCAGTTTTACAATCCAACAAGAAAAGCAATGCCACACAATCCTCTGCTGATTTATTAGAGCATCAGAATAATAACAATAATACCCTAACACCACCAAGCTTAAACCTTCCAGCACTGAAATTTGAACTTGATGGAGGAGGAGGAGATGTTGAAGTCCAATCACCAGATAGTTCAATGTGGGATTCCTTCTTCTCTGATCAGTTAGATGCTGATTTCATGATGTGTTCCCCAGTCAGGAACGTCCCTTCCCCTCAACAACAACAACAACCCTCAACTTACAATTGCAACTACAACTACGCTCATTCAATGCAAGCACAAAGCTTTTCCGGCTGCTCTCCGCCGCGGTTTTCGCCGCAGATCGGGGCCTATACCAGCGGCGGAAGCAAAGGGAAAGGGCTTAGTCCACTCCACAGGGTGTTCAACTCGCCAAACAATCAGTACATGCAGCATGTTGAGAATCTTTCACTGCCTGCAATTGAGGAGTTCTTGGAAGAGTTTCAACAAGGGGAATACTCGTCGTCCATAACCGCCGCGAATAACAGCAGCAAGGTTGGCGCCGGTTCTGATGATATTGTTGGAACTTCTTCTGAATGCTTTGACTTGGGGAACTCGATTCCTTCGATCTTGGGGAATTTGATTCCCTCGGGGAGTGAAGATTCGTCGGTGCAAGATAACAGTGAGATGTACCATCACATGGGTTCCATGGTTAGTGCGTCGCTTTCGCAAGCGCTGCAACAAGAAAGGTACCATGAGAAGCAGCAGAAGCAACAAGCACAACAACTTCAACAACAGCATCAAAATTTGATGGTGCCTATTCCAATCGGACTAGAGCAGGAGCAAGACAGTGGGCTGCAACTGGTGCACCTACTTCTAGCATGTGCAGAGGCAGTGGCCAAAGACGAATACATGCTTGCAAGGAGATACCTTCAACACCTCAACCGAGTCGTAACACCCCTTGGCGACTCCATGCAACGCGTCGCTTCATGCTTCACTGAGTCCCTCAGCGCAAGGCTCGCCACAACACTCGCCACAAAGTCATCAACATCCTCCTCCAATGGCAAGACCACACCTTCATCTTCGTCCTCGTCATCCTCATCACTCAACACTTTCCCTCATTCAAACTCCATGGAAGTCCTCAAGATCTACCAGATCGTGTACCAGGCTTGTCCCTACATCAAATTCGCTCACTTCACCGCCAACCAGGCAATCTTCGAGGCCTTCGAGGGCGAAGAGCGGGTCCACGTCATAGACCTGGACATCCTCCAAGGCTATCAATGGCCCGCCTTCATGCAGGCCCTCGCTGCTAGACCCGGTGGTGCTCCGTTCCTACGGATCACCGGAGTCGGGCCTAGCATCGAGTCTGTTAAAGAGACTGGCCGTTGCCTAACAGAATTGGCCCACTCGCTACACATCCCCTTTGAGTTCCACCCCGTTGGGGAACAACTGGAGAATCTAAAGCCACACATGTTCAACCGCCGAGTCGGCGAAGCGCTGGCCGTTAATACCGTTAACCGGCTCCACCGCGTCCCCGGTAACGCCCTCGGAAACTTGCTCTCCATGATAAGGGACCAAGCACCAAGCATAGTGACTCTAGTTGAGCAAGAAGCTAGCCACAACGGGCCTTATTTTCTTGGGAGATTCTTGGAGGCATTGCATTATTATTCGGCGATTTTCGATTCCTTGGACGCGACGTTTCCGCCGGAATCGGCTCAGAGGGCGAAGGTGGAGCAGTACATCTTCGCGCCGGAGATAAGGAACATCGTGGCGTGCGAGGGGCCAGATAGGGTGGAGAGGCATGAGAGGCTTGATAAGTGGAGGAAGATCATGGAAGGGAAAGGGTTCAAAGGGGTTCCACTGAGTCCGAACGCGGTGACTCAGTCAAAGATCTTGCTGGGACTGTATTCTTGTGATGGGTATCGTCTCACGGAGGACAAGGGATGCTTGCTTCTTGGCTGGCAGGATAGGGCCATAATTGCTGCATCCGCTTGGCGCTGCTAA 2082 0.5062 MINSLCGSSVSLKSENSSTKLQPTSSNDSVLQSNKKSNATQSSADLLEHQNNNNNTLTPPSLNLPALKFELDGGGGDVEVQSPDSSMWDSFFSDQLDADFMMCSPVRNVPSPQQQQQPSTYNCNYNYAHSMQAQSFSGCSPPRFSPQIGAYTSGGSKGKGLSPLHRVFNSPNNQYMQHVENLSLPAIEEFLEEFQQGEYSSSITAANNSSKVGAGSDDIVGTSSECFDLGNSIPSILGNLIPSGSEDSSVQDNSEMYHHMGSMVSASLSQALQQERYHEKQQKQQAQQLQQQHQNLMVPIPIGLEQEQDSGLQLVHLLLACAEAVAKDEYMLARRYLQHLNRVVTPLGDSMQRVASCFTESLSARLATTLATKSSTSSSNGKTTPSSSSSSSSSLNTFPHSNSMEVLKIYQIVYQACPYIKFAHFTANQAIFEAFEGEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGPSIESVKETGRCLTELAHSLHIPFEFHPVGEQLENLKPHMFNRRVGEALAVNTVNRLHRVPGNALGNLLSMIRDQAPSIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPESAQRAKVEQYIFAPEIRNIVACEGPDRVERHERLDKWRKIMEGKGFKGVPLSPNAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRAIIAASAWRC 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271954g00002 693 ProSiteProfiles GRAS family profile. 305 692 IPR005202 -
Stsc271954g00002 693 Coils Coil 272 292 - -
Stsc271954g00002 693 MobiDBLite consensus disorder prediction 1 42 - -
Stsc271954g00002 693 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 266 687 IPR005202 -
Stsc271954g00002 693 MobiDBLite consensus disorder prediction 373 396 - -
Stsc271954g00002 693 Pfam GRAS domain family 314 692 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271954g00002 Stsc-Chr271954 14993 19026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271954g00002 308 693 GRAS Transcription Factor Family AT1G66350 44.643 6.68e-101 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc271954g00002 GRAS 6.9e-130 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271954g00002 - - gmx:100805039 928.317