Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271953g00007 ATGGCCATGGATAGCTTTGCATCCATGGTGGGGTGTTTGAAGAAATCGCTTTCTCAAGCTCTTGTGTGTTACTATGCATTTGCAGGTGAAGTGGTGGCGAACACGGCGGGTGAACCGGAGTTGCTATGCAACAACCGTGGTGTTGATTTTGTTGAAGCTGTTGCTGACATTGAGCTTCGGTGTCTCAACTTGTACAATCCTGATGACTCCATTGAAGGGAAGCTTGTTCCCAAGAAGAAGCGTGGCGTCTTTGCTGTCCAGGCGACATCACTGAAGTGCGGTGGGATAGTAGTGGCATGCACATTTGACCATCGCATTGCGGATGCATACTCAGCAAACATGTTCCTTGTATCATGGGCCAACATGGCCCACCCAACTAGGCCCAACAAGCCCACAACCACTCACCACCATCATCCTTGGCAGAAGCCATGCTTCCGTCGCTCCCTTCTCAGTCCCCGCCGCCCAGGAATCATCCACCGTTCCCTCCACAACATGTACATCCCCATCTCCAAGCTCCCACCGCCGCCAGCTACCACCGCCAGCCCTCTCCTCAGCCGCATTTACTATGTCACGGCAAAGCAGCTCCAACACATGCAGTCACTCGCTAGCAACAACGGTGGCGCCAAGCGGACAAAACTTGAGTCGTTCTCTGCGTTCTTGTGGAAGATGGTTGCTCGTGCAGCATTAAGAGACATCAATGGCAAAAAGGTTGTTATTGCCAAAATGGGCATTGTGGTTGATGGAAGGAAAATGCTAGCTGATGGTAGTAGTGGTAGCAGCGGTGACGAAGGGAGAAAATCAATGATGAATTCTTATTTTGGAAATGTGCTTTCCATACCCTTTGGTGCAAAACTGGTGGAGGAGCTAGTGGAGAAACCGTTAGGGTGGGTGGCAAATGCAGTTCATGAGTTTTTGGAGGTGGCGGTGACGGATGAGCACTTTTTAGGGCTAATTGATTGGGTGGAAGCACACCGGCCGGTTTTAGGGTTGGCAAAGATTTATTGCAGTGGCGCCGACGACAACGAGGGGCCGGCATTTGTGGTATCGTCCGGACAAAGGTTCCCAGAGGAGAAGGTGGATTTTGGGTGGGGGAAGGCTGTGTTTGGCTCTTACCATTTTCCTTGGGGAGGAGAAGCTGGCTATGTGATGCCAATGCCAAGCCCTCTTTTGAATGGTGATTGGGTTGTTTACATGCACCTTGTGAAGCAACAGTTAGAGATCATAGAGTCTGAGGCTTCCTATTTCTTTAAGCCTTTAACTTGGGAGTACCTTAGTCAGTGA 1281 0.5051 MAMDSFASMVGCLKKSLSQALVCYYAFAGEVVANTAGEPELLCNNRGVDFVEAVADIELRCLNLYNPDDSIEGKLVPKKKRGVFAVQATSLKCGGIVVACTFDHRIADAYSANMFLVSWANMAHPTRPNKPTTTHHHHPWQKPCFRRSLLSPRRPGIIHRSLHNMYIPISKLPPPPATTASPLLSRIYYVTAKQLQHMQSLASNNGGAKRTKLESFSAFLWKMVARAALRDINGKKVVIAKMGIVVDGRKMLADGSSGSSGDEGRKSMMNSYFGNVLSIPFGAKLVEELVEKPLGWVANAVHEFLEVAVTDEHFLGLIDWVEAHRPVLGLAKIYCSGADDNEGPAFVVSSGQRFPEEKVDFGWGKAVFGSYHFPWGGEAGYVMPMPSPLLNGDWVVYMHLVKQQLEIIESEASYFFKPLTWEYLSQ 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271953g00007 426 Gene3D - 2 168 IPR023213 -
Stsc271953g00007 426 Coils Coil 426 426 - -
Stsc271953g00007 426 Pfam Transferase family 10 413 - -
Stsc271953g00007 426 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 9 387 - -
Stsc271953g00007 426 Gene3D - 169 410 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271953g00007 Stsc-Chr271953 35111 38467 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271953g00007 12 409 Monolignol Biosynthesis Gene Families AT5G48930 24.939 1.71e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271953g00007 - - tpra:123917257 594.734