Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271952g00030 ATGAGTTTTTGCTTCAGCTCTAATAATACTTATTATCAAATAATTGGACTAGTTTCTCTAATCTTACTTCCACTGCTCTTTCTTTTGCGGAGGTCAAAACTCAGCATAAGCAGAACACAGCAGCCACCCTTAGCGGCGGGTGCATGGCCCATAATAGGCCATCTCCCGCTCTTCTCAGCTTCAGAGCCACCTCACAAAACTCTAGGCGCCATGGTTGACAAATACGGACCCATCTTCACCATCAAGATTGGGTCCCAACGTGCTGTCGTCATCAACAACTGGAAAACTGCTAAGGAATGCTTCACCACCAACGACGCAGCCCTATCATCACGCCCTACTAACCTCATCGCTGTCGAACACCTGGGCTACAAAGGAGCCATGTTTCCCTTCGCATCTCGCGCCAATCATCTGTATTGGCGCGAGATGCGAAGGATTGCCAACCAGGAGTTGCTTTCCAATAAGCGAGTGGAGCTCTTAGGCCCCGTTCGTGTCTCCGAAGTAGAAAGCAGCATCAAATTGCTATTCAAAAAGTGGAAGGAGGAGGAAAAGAACGAGTCGGGCTATATTGCGGTGGAGATGAAGAAGTGGTTTGGGGAGTTGATCCTCAACATGACTCTTAGAGCGGTTGCAGGGAAGAGATACTTGGGTGGAAGCGACGGCGGTTCTGATGAGGAAGGACGGCGGTATTTGAAAGCGTTGAGGGAATTCGTGCAGCAACTGGGGAAGATGTTAGCGGGCGATGCCGTGCCATGGCTTCGGTGGGTGGACTTGGGTGGACACGAGAAAGCCATGAAAGAAACCGCTAAGGAATTGGACGCCATGTGCGATAAGTGGTTAGAAGAGCATCGAGAGAAAAGGGTTTTAGAAGGAGATGATGGAAGGAGTCAAGATTTCATTGACGTAATGCTTTCGGTTCTTGATGGTACTGATGAGATTGCAGGATATGATGCGGATACCATCATCAAAGCTACAGTGCTGATCTTAACTGCAGGAGCTGTTGACACAAGCACAGTAAGCCTTACATGGATAATATCTTGTTTGCTAAATAACACTGCTAGTTTGGAAGAAGCACAAAAGGAGTTGGATCTCCAAGTTGGGAAAGAAAGATACTTAAAAGAATCAGACATAAGTAACTTAGTTTACATTCAAGCCATAGTTAAAGAAACATTAAGATTACACCCTCCATCAACTCTTTCTGGACTCCGTGTGTTTACAGAGGACTGCACTATTGATGGCTACTACATTCCAAAAGGAACACCGCTAATGACAAATTTGTGGAAGATTCACAGAGATCCAAACATTTGGTTGGACCCACTTGACTTTAAACCGGAGAGGTTTCTTACCGGTAACCACAAAAATGTTGATGTGAGAGGTAATCACTTTGAGCTGATCCCGTTTGGGAGTGGGAGAAGAATCTGCCCCGGGATATCTTTTGCAATGCCTTTGATTCATCTTACTCTGGCTACTTTCTTGCAATCCTTTGAAATTTCAAAGCCATCTCATGAACCCATTGATATGACTGAAAAATTTGGCCTAACAACCACCAAGGCTACTCCTCTTGTTGTGCTCATCAAACCACGTCTTTTTCCCAAGCTTTACCAAGACTTACCCTAA 1614 0.4554 MSFCFSSNNTYYQIIGLVSLILLPLLFLLRRSKLSISRTQQPPLAAGAWPIIGHLPLFSASEPPHKTLGAMVDKYGPIFTIKIGSQRAVVINNWKTAKECFTTNDAALSSRPTNLIAVEHLGYKGAMFPFASRANHLYWREMRRIANQELLSNKRVELLGPVRVSEVESSIKLLFKKWKEEEKNESGYIAVEMKKWFGELILNMTLRAVAGKRYLGGSDGGSDEEGRRYLKALREFVQQLGKMLAGDAVPWLRWVDLGGHEKAMKETAKELDAMCDKWLEEHREKRVLEGDDGRSQDFIDVMLSVLDGTDEIAGYDADTIIKATVLILTAGAVDTSTVSLTWIISCLLNNTASLEEAQKELDLQVGKERYLKESDISNLVYIQAIVKETLRLHPPSTLSGLRVFTEDCTIDGYYIPKGTPLMTNLWKIHRDPNIWLDPLDFKPERFLTGNHKNVDVRGNHFELIPFGSGRRICPGISFAMPLIHLTLATFLQSFEISKPSHEPIDMTEKFGLTTTKATPLVVLIKPRLFPKLYQDLP 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271952g00030 537 CDD CYP82 76 527 - -
Stsc271952g00030 537 Pfam Cytochrome P450 46 515 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00030 537 Gene3D Cytochrome P450 29 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00030 537 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 466 475 IPR017972 GO:0005506|GO:0016705
Stsc271952g00030 537 PRINTS E-class P450 group I signature 96 117 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00030 537 PRINTS E-class P450 group I signature 473 496 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00030 537 PRINTS E-class P450 group I signature 320 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00030 537 PRINTS E-class P450 group I signature 424 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00030 537 PRINTS E-class P450 group I signature 72 91 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00030 537 PRINTS E-class P450 group I signature 340 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00030 537 PRINTS E-class P450 group I signature 383 401 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00030 537 PRINTS E-class P450 group I signature 463 473 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00030 537 PANTHER CYTOCHROME P450 82C3-RELATED 21 533 - -
Stsc271952g00030 537 SUPERFAMILY Cytochrome P450 48 527 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00030 537 PRINTS P450 superfamily signature 384 395 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00030 537 PRINTS P450 superfamily signature 331 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00030 537 PRINTS P450 superfamily signature 464 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00030 537 FunFam Cytochrome P450 82C4 32 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271952g00030 Stsc-Chr271952 105024 107724 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271952g00030 43 533 Cytochrome P450 AT4G31940 48.795 2.41e-166 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271952g00030 - - qsu:112023929 589.726