Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271952g00029 ATGCTGAGTTCAATTCTGAGTACCTTAAGAACTACCAATCTCACTCTGCTTTTTCTAATCTTACTTATTCCATTACTCTTTCTTTTGAAGACCTCCAAAGCTGGCCGCCGCCGACGAGGACTCAAAGAGCCACCGTTAGCGGCGGGTGCATGGCCCATATTCGGTCATCTCTGGATCTTCAGGAGCTCTCAGCCACCTCAGAAAACTCTAGGAGCCATGGCTGACAAATACGGAGCCATATTCAGAATCAAGATCGGATCAAAACGTGCTGTGGTCATCAACGACTGGAAAACCGCCAAGGAATGCTTCACCACCAACGACATCGCCGTGTCATCGCGCCCTAGGCTCATCGCCATCGAACGCTTGACTTATAACCAAGCCATGTTTGCTTTCACACCTTATGGCCCTTACTGGCGCGAAGTGCGAAGGATTTGCAACCAAGAATTGCTCTCCAATCGCCAAATCGAGTTATCAAGCCACGTTCGCGTCTCTGAAGTACAAGCCGGAATTAAAGCGCTTTTCAAACTCTGGTCTGAGAAGAAGAACGGCGGGTACGTTGCGGTGGAGATGAGGAAGTGGTTTGGGGAATTAATGCTGAGAACCGTTGTTAGAGTGGTTGCTGGAAAGCGAGGTTTTGGATCTGAGGAGGAAGCACAGCGGTGTCTGAAAGCGTTGAGAGATTTAATGCGGCAGTTAGGGTTGTTTCTGGTGGGTGATGCTGTGCCTTGGCTTCGGTGGCTGGACTTTGGTGGACATGAGAAAGCCATGAAAGAGACTGCTAAGGAGACGGATGCCATTGTCGGGGAGTGGTTGGAGGAGCATCGGCGGAGAAGAGCTTGTGGTGAGGTTGGGAGTCAAGATTTCATGGACGCCATGCTTTCAATTCTTGATGGGGCTGAGCTTGGAGGATTTGATGCCGATACCGTCATCAAATCCACCACTTTGATTCTGATGGCAGGATCCATTGACACCACTTCAGGAACTCTTATATGGATCCTATCTTGTATCTTGAACAATACAGCCACTATCGAACTTGCACAGAAGGAGTTGGACATCCATGTTGGCAAAGAAAGATTTGTAAAAGAAAATGACTTAAGTAAGTTGGATTACATTCAAGCTATCGTCAAAGAGACATTAAGACTATACCCTACAGCAATCTTTTCAGGACCTCATGAGTTCACAGATGATTGCTTTGTTAATGGCTACTACATTCCAAAGGGAACGCAACTAATCACAAATTTATGTAAGATTCACACGGATCCTAGCATCTGGTCTGACCCATTGGATTTTAAGCCAGAGAGGTTCCTTACCACTCACAAAAATGTTGATGTCAGAGGTAACAACTTTGAGTTGATCCCATTTGGAAGTGGGAGAAGAATCTGTGTAGGATTATCATTTGCCATACCCATGCTTCATCTAACTTTGGCTACTTTCTTGCAATGCTTTGAAATTTCAAAGCCATCTGATGAACCCATTGATATGAGTGAAGTCTTTGGCCTCACAACCACGAAAATTAATCCACTTGATGTTCTCATCAAGCCACGCCTTTCTTCCAGGCTTTACGATTTAGCATGA 1575 0.4584 MLSSILSTLRTTNLTLLFLILLIPLLFLLKTSKAGRRRRGLKEPPLAAGAWPIFGHLWIFRSSQPPQKTLGAMADKYGAIFRIKIGSKRAVVINDWKTAKECFTTNDIAVSSRPRLIAIERLTYNQAMFAFTPYGPYWREVRRICNQELLSNRQIELSSHVRVSEVQAGIKALFKLWSEKKNGGYVAVEMRKWFGELMLRTVVRVVAGKRGFGSEEEAQRCLKALRDLMRQLGLFLVGDAVPWLRWLDFGGHEKAMKETAKETDAIVGEWLEEHRRRRACGEVGSQDFMDAMLSILDGAELGGFDADTVIKSTTLILMAGSIDTTSGTLIWILSCILNNTATIELAQKELDIHVGKERFVKENDLSKLDYIQAIVKETLRLYPTAIFSGPHEFTDDCFVNGYYIPKGTQLITNLCKIHTDPSIWSDPLDFKPERFLTTHKNVDVRGNNFELIPFGSGRRICVGLSFAIPMLHLTLATFLQCFEISKPSDEPIDMSEVFGLTTTKINPLDVLIKPRLSSRLYDLA 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271952g00029 524 SUPERFAMILY Cytochrome P450 50 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00029 524 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 454 463 IPR017972 GO:0005506|GO:0016705
Stsc271952g00029 524 Gene3D Cytochrome P450 29 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00029 524 CDD CYP82 78 515 - -
Stsc271952g00029 524 PANTHER CYTOCHROME P450 82C3-RELATED 18 521 - -
Stsc271952g00029 524 Pfam Cytochrome P450 48 502 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00029 524 PRINTS E-class P450 group I signature 372 390 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00029 524 PRINTS E-class P450 group I signature 74 93 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00029 524 PRINTS E-class P450 group I signature 329 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00029 524 PRINTS E-class P450 group I signature 413 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00029 524 PRINTS E-class P450 group I signature 309 326 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00029 524 PRINTS E-class P450 group I signature 461 484 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00029 524 PRINTS E-class P450 group I signature 98 119 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00029 524 PRINTS E-class P450 group I signature 451 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00029 524 FunFam Cytochrome P450 82C4 34 513 - -
Stsc271952g00029 524 PRINTS P450 superfamily signature 461 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00029 524 PRINTS P450 superfamily signature 373 384 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00029 524 PRINTS P450 superfamily signature 452 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc271952g00029 524 PRINTS P450 superfamily signature 320 337 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271952g00029 Stsc-Chr271952 102210 104381 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271952g00029 45 521 Cytochrome P450 AT4G31940 46.653 8.44e-158 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271952g00029 - - qsu:112023929 616.305