Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271952g00024 ATGAAAACTACTACTACTACTACTACTACTACTACTACTGCAATGCCATTGGTGGAGCCAGACCTCTCCTTAAACATTAGCCCTCCTTTCCTTTCAGCCAAAGATATGTGCTCCTCAATCTCTGATTCAGGTAGCAGTGGAAGCGATTCAAGCCATGATAATAATAACAATTACTTCACTGTCCCACAACCTGCTACATTGGGCTTATTAGGCTCTTCTGCACCTGCAGCAACAAACTTGAATCATCATCTCCATCATCAGCATCCATCAGTATTGATGCAAGGGCTCTCATCAAGAAACTATTTCAATAATCATCATCATCTTCAGCAACCTCAAATCCATTGCCGCCCCGATTTCAAACGAAATGGCGGCGGCAGAAGAAGCATGAGAGCTCCCAGAATGAGATGGACTACCACACTCCATGCTCATTTTGTTCATGCTGTTCAGCTTCTTGGCGGTCATGAAAGGGCAACTCCGAAGTCAGTGTTAGAGTTAATGAATGTTAAGGATCTAACCCTAGCTCACGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGTACCACTGCTGACAAAGTCACAGGTAATGGTCACAACGTAGATATGGGGTTTGGGCAGCAAAGGCAAGAGGTCATGGTGGATCATCTGCATTATACTCAGGGAGACCTTCTCCACCACCACCCACTTCTGCAACTGCAACAATCCCACAGGTCATCATGTCAATCACCACTACTAGAGACAAATACAAATATTACTCGACAAAAACCCCATATCAGCTTCCTCTATTCTCATCTCCAACATGGTAATGAAATCATGAATAATCATGAAGGAAGGTTGTCGACGAATTACTTGAAGATGAAGGAGAGGTTGGATTATAGCAATTTGTCCTCAGATTCGGAAGGCGTTGATCTTGATCTGGAATTCACTCTTGGAAGGCCAAAAACCATCAGGCAAAATCATCAACAAAGTTAA 975 0.4318 MKTTTTTTTTTTTAMPLVEPDLSLNISPPFLSAKDMCSSISDSGSSGSDSSHDNNNNYFTVPQPATLGLLGSSAPAATNLNHHLHHQHPSVLMQGLSSRNYFNNHHHLQQPQIHCRPDFKRNGGGRRSMRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTTADKVTGNGHNVDMGFGQQRQEVMVDHLHYTQGDLLHHHPLLQLQQSHRSSCQSPLLETNTNITRQKPHISFLYSHLQHGNEIMNNHEGRLSTNYLKMKERLDYSNLSSDSEGVDLDLEFTLGRPKTIRQNHQQS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271952g00024 324 FunFam Myb family transcription factor 130 188 - -
Stsc271952g00024 324 MobiDBLite consensus disorder prediction 1 22 - -
Stsc271952g00024 324 Gene3D - 131 188 - -
Stsc271952g00024 324 MobiDBLite consensus disorder prediction 111 125 - -
Stsc271952g00024 324 NCBIfam myb-like DNA-binding domain, SHAQKYF class 132 185 IPR006447 GO:0003677
Stsc271952g00024 324 MobiDBLite consensus disorder prediction 108 129 - -
Stsc271952g00024 324 MobiDBLite consensus disorder prediction 1 18 - -
Stsc271952g00024 324 Pfam Myb-like DNA-binding domain 133 184 IPR001005 -
Stsc271952g00024 324 SUPERFAMILY Homeodomain-like 129 186 IPR009057 -
Stsc271952g00024 324 MobiDBLite consensus disorder prediction 37 59 - -
Stsc271952g00024 324 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 20 316 IPR044847 GO:0000976|GO:0006355|GO:0010158
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271952g00024 Stsc-Chr271952 84810 87854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271952g00024 100 189 G2-like Transcription Factor Family AT5G42630 71.028 1.06e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc271952g00024 Myb_DNA-binding 1.4e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271952g00024 - - adu:107495895 224.172