Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271952g00021 ATGAGCTTAGAAAATCTTGAGAGTTTCTGTCCTCTACCCTCAACCCTCCCCCTCCGAATGCATTGTTCACATTCTTGTAAAATGCATGTCTTTGGATTATGCTTCCTCATATTGTTGTCCCTCTTCATCATCCTCTCATCACCCTCTCATGCCCTTTCCAGAGATGAAGCCTCATTCATTGCACGTCGCCAATTGTTAACTCTTGAAGAGAACGCTGATTTACCCGACAACTATGTAGAAAGCTACCAAATTAACTTTACATTCGATAATCCTAGGCTCAAAGGTGCCTACATTGCTCTTGAAGCATGGAAACATGCCATCTATTCAGACCCATCAAACTTCACATCTAATTGGGTGGGCCCTGATGTTTGCTCCTACAATGGAGTCTATTGTGCTCCACCACCTGATGATTCTTCAATTCAGGTTGTGGCTGGAATTGATCTTAACCATGCAGATATTGCAGGCTACATCCCTTCTGAGATTGGCTTGTTCACTGATCTTGCACTTTTGCACATCAATTCTAACAGGTTTTGTGGCATTCTCCCAAGGAGTTTCTCCAAGTTGAAGCTCTTGTATGAGCTTGATATAAGCAACAACCGCTTTGTGGGTCCATTCCCAAGCCATGTTCTTTCCATCTCTGTTCTCCATTACCTTGACATCAGGTTCAACGACTTCGAAGGCGAGTTGCCATCTGAGGTTTTTAACACGACACTAGATGCAATATTCTTGAACAACAACAGGTTCACATACACAATACCGGAGAGCATCGGAGGCTCTTCGGCCTCCGTGATTGTTCTGGCCAATAACCACTTCCAGGGATGCATCCCTGGAAGCATTGGCCAGATGGGAAAAACACTCAATGAGTTTGTTGCGACGAACAACAATCTCACTGGGTGTTTGCCTGGGGAGATTGGAAAGCTGAGCCAGGTTGAGGTGCTTGACATTAGTGACAACAATTTGGTTGGTGTGTTGCCAAGGACGTTGACGGGATTGAAGGGAGTGCAGGTGTTGTCCATTGCGGACAACAAGCTTACAGGCTTTGTGCCAAAGAGCGTGTGTGAGTTGGGGAACTTGAAGAACTTCACATTCTCGAATAACTACTTTAACGGTGAGGAAGAGGGTTGTGTGCCTAAAACAAGAAAGGGGGTGAAGATGGACGATCAAAATAACTGTGTACCTGAAAGGCCGAAACAGAGGGATGGAAGTTCTTGCAATGCTGTGATAAGTAAGCCTGTTGATTGCAGCAAGGCACAGTGCAGCAGTGGTGGAAGCGGCGGTGGGAAGGCAACGCCAATAACACCACCATCATCAAATAATAATACTCCTTCAAAGGAGAAACCAACTCCCTCCTCACCTAGCAACAAAAGACCTTCGTCTCCAACTGAGAAGCCTACACCGCCGACGCTAAAGCCACCTCCTTCTCCAACTGATAAGCCAACTCCCGCGTCGCCAAAGCCAAGTCCAACACCACAAACTCCGAAACCAGACAAAGCACCTAAGCATGATGATGATGATCATTATGAAGCACCTAAAGAACGACATAGGCCTCCAAAATCTCCATCTCCAGCACCGGTAGTACATTCTCCTCCTCCTACACCAGTCTACTCTCCACCACCTCCTCCACGGCTTCAATCTCCATCACCTGCACCTGCACCAACACCACTAGTCAATTCTCCACCACCACCTCCAGTTTACTCTCCACCACCACCCGTCAACTCTCCTCCTCCACCAGTTCAGTCTCCACCACCACCTACCTACTCTCCTCCTCCACCGGTATACTCTCCCCCACCAACACCTACCTACTCTCCTCCTCCACCAGTCTACTCTCCACCACCAACACCTACCTACTCTCCTCCTCCCCCGCCAGTTTACTCTCCACCACCAACACCTATCTACTCTCCACCACCCCCACCAGTGTACTCTCCGCCACCAACACCTATATACTCTCCACCACCCCCGCCAGTGTACTCTCCACCACCAAACTCCCCGCCACCACCCGTCCAATCTCCTCCTCCGCCGGTTCAATCCCCACCACCACCAGTCCTGTCTCCTCCACCACCAGTTAACCCTCCTCCTCCACCACCCGTCTACTCTCCTCCGCCACCCGTCAACTCGCCTCCTCCTCCTGTTGTTTCTGCACCACCACCACAAGACGATGATATGGTTCTTCCACCTGACTTCGGTTCATCATATGCTTCACCCCCTCCACCAATCATCGCTGGCTACTAA 2229 0.4935 MSLENLESFCPLPSTLPLRMHCSHSCKMHVFGLCFLILLSLFIILSSPSHALSRDEASFIARRQLLTLEENADLPDNYVESYQINFTFDNPRLKGAYIALEAWKHAIYSDPSNFTSNWVGPDVCSYNGVYCAPPPDDSSIQVVAGIDLNHADIAGYIPSEIGLFTDLALLHINSNRFCGILPRSFSKLKLLYELDISNNRFVGPFPSHVLSISVLHYLDIRFNDFEGELPSEVFNTTLDAIFLNNNRFTYTIPESIGGSSASVIVLANNHFQGCIPGSIGQMGKTLNEFVATNNNLTGCLPGEIGKLSQVEVLDISDNNLVGVLPRTLTGLKGVQVLSIADNKLTGFVPKSVCELGNLKNFTFSNNYFNGEEEGCVPKTRKGVKMDDQNNCVPERPKQRDGSSCNAVISKPVDCSKAQCSSGGSGGGKATPITPPSSNNNTPSKEKPTPSSPSNKRPSSPTEKPTPPTLKPPPSPTDKPTPASPKPSPTPQTPKPDKAPKHDDDDHYEAPKERHRPPKSPSPAPVVHSPPPTPVYSPPPPPRLQSPSPAPAPTPLVNSPPPPPVYSPPPPVNSPPPPVQSPPPPTYSPPPPVYSPPPTPTYSPPPPVYSPPPTPTYSPPPPPVYSPPPTPIYSPPPPPVYSPPPTPIYSPPPPPVYSPPPNSPPPPVQSPPPPVQSPPPPVLSPPPPVNPPPPPPVYSPPPPVNSPPPPVVSAPPPQDDDMVLPPDFGSSYASPPPPIIAGY 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271952g00021 742 MobiDBLite consensus disorder prediction 495 518 - -
Stsc271952g00021 742 FunFam Leucine-rich repeat extensin-like protein 1 97 258 - -
Stsc271952g00021 742 MobiDBLite consensus disorder prediction 379 742 - -
Stsc271952g00021 742 Gene3D Ribonuclease Inhibitor 97 396 IPR032675 -
Stsc271952g00021 742 Pfam Leucine rich repeat 309 367 IPR001611 GO:0005515
Stsc271952g00021 742 MobiDBLite consensus disorder prediction 402 458 - -
Stsc271952g00021 742 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 34 638 - -
Stsc271952g00021 742 PRINTS Proline rich extensin signature 431 452 - -
Stsc271952g00021 742 PRINTS Proline rich extensin signature 478 495 - -
Stsc271952g00021 742 PRINTS Proline rich extensin signature 513 538 - -
Stsc271952g00021 742 PRINTS Proline rich extensin signature 460 476 - -
Stsc271952g00021 742 MobiDBLite consensus disorder prediction 459 494 - -
Stsc271952g00021 742 MobiDBLite consensus disorder prediction 379 394 - -
Stsc271952g00021 742 SUPERFAMILY L domain-like 99 373 - -
Stsc271952g00021 742 FunFam Leucine-rich repeat receptor protein kinase EMS1 259 350 - -
Stsc271952g00021 742 MobiDBLite consensus disorder prediction 519 721 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271952g00021 Stsc-Chr271952 72110 74415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271952g00021 31 496 Trihelix Transcription Factor Family AT3G19020 52.905 1.92e-165 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271952g00021 - - ahf:112705802 687.952