Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271952g00020 ATGGCTATCCGTGTAACCTTCTCCTTCTCCGGCTATGTCGCCCACAACCTTGTCTCCACCGCCACCTCCCGCGTATCCAATTCCCGCTGCCTCCAAGAGTGCTGGATCCGTTCTCGCCTCTTCGGGGTTAGCCAAAAGCATGACCGAGATCCCACCGCCGGCGTCCGGACCTTCCATTCCGATCATCTCCGGAGGCCGACGCCACGCAGTCCCTGCGCCTACACCGCCCTCGCCGGAGAGATTTTCGGCGATAACTACAGCAACCCGATCGTGTTGGGCTTGATCTCCGTGATGAAGTCAACGGTCGGAGTTTCTTGTTCGTCGTCGGCTTCCGTGGGTATTTTCGGCATTTCGCCCTTCAAGACCTCTTCCATCATACCTTTCTTGCAGGGCTCTAAGTGGCTTCCGTGTAACGAATCCGTCCCTAATACCACCTCCACAAACTGGGAGGTCGATAAGGGCGGAACGCTGTGTTCTGAGGAGGTGGCTGCTAACGCTGTCTCCGCCGCTCAAGCTGGGAAGAGCAGCTGGCTCTCGCGGGTGTTGAACGTGTGTTCTGAGGATGCCAAGGCCGCGTTCACCGCCGTCACTGTTAGCCTGCTCTTCAAGTCTTTCTTGGCTGAACCTAGGTCTATTCCCTCTTCTTCTATGTACCCAACTCTTGAAGTCGGTGATCGCATTATGGCCGAGAAGTTTTCCTTCTTCTTTAGAAAGCCTAATGTTTCAGACATAGTGATTTTTAAGGCACCTCCTGTTTTACAAGAATTTGGTTTCTCTTCCTCTGATGTGTTTATAAAAAGAGTTGTAGCTAAAGCTGGAGACACTGTTGAAGTTCGTGATGGTAAATTACTTGTGAATGGTGTTCCTGAAGAAGAGGAATTCATTTTAGAGCCTCTTGCTTATGAGATGGAATCAATGGTTGTGCCAGAAGGATACGTTTTTGTGTTAGGAGATAACCGTAACAACAGCTTTGACTCACATAACTGGGGTCCACTCCCTGTTGAGAGCATTGTTGGTAAATCCATGTTTCGGTACTGGCCTCCATCCAAAGTATCTGACATTGATGCACACCATAAACTCACATCTGGAAACAAGGCTGTGGCAATTTCTTGA 1113 0.5031 MAIRVTFSFSGYVAHNLVSTATSRVSNSRCLQECWIRSRLFGVSQKHDRDPTAGVRTFHSDHLRRPTPRSPCAYTALAGEIFGDNYSNPIVLGLISVMKSTVGVSCSSSASVGIFGISPFKTSSIIPFLQGSKWLPCNESVPNTTSTNWEVDKGGTLCSEEVAANAVSAAQAGKSSWLSRVLNVCSEDAKAAFTAVTVSLLFKSFLAEPRSIPSSSMYPTLEVGDRIMAEKFSFFFRKPNVSDIVIFKAPPVLQEFGFSSSDVFIKRVVAKAGDTVEVRDGKLLVNGVPEEEEFILEPLAYEMESMVVPEGYVFVLGDNRNNSFDSHNWGPLPVESIVGKSMFRYWPPSKVSDIDAHHKLTSGNKAVAIS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271952g00020 370 FunFam Peptidase/ serine-type peptidase 214 345 - -
Stsc271952g00020 370 SUPERFAMILY LexA/Signal peptidase 204 352 IPR036286 -
Stsc271952g00020 370 ProSitePatterns Signal peptidases I signature 3. 313 326 IPR019758 GO:0004252|GO:0016020
Stsc271952g00020 370 PRINTS Bacterial leader peptidase 1 (S26A) family signature 205 221 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc271952g00020 370 PRINTS Bacterial leader peptidase 1 (S26A) family signature 264 276 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc271952g00020 370 PRINTS Bacterial leader peptidase 1 (S26A) family signature 308 327 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc271952g00020 370 CDD S26_SPase_I 208 340 IPR019533 GO:0004252|GO:0006465
Stsc271952g00020 370 PANTHER SIGNAL PEPTIDASE I 147 352 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc271952g00020 370 NCBIfam signal peptidase I 192 347 IPR000223 GO:0006508|GO:0008236|GO:0016020
Stsc271952g00020 370 ProSitePatterns Signal peptidases I serine active site. 214 221 IPR019756 GO:0004252|GO:0016020
Stsc271952g00020 370 Gene3D Umud Fragment, subunit A 202 359 - -
Stsc271952g00020 370 Pfam Signal peptidase, peptidase S26 189 346 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271952g00020 Stsc-Chr271952 65740 68534 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271952g00020 217 347 MADS-box Gene Family AT1G29960 32.331 4.48e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271952g00020 K03100 - gmx:100817525 517.694